Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6781 | 5' | -51.7 | NC_001875.2 | + | 105578 | 0.66 | 0.987637 |
Target: 5'- aGgcGCGUGUACAucuuGG-CGGugGACAc -3' miRNA: 3'- gCuuUGCACGUGUc---UCaGCCugCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 65436 | 0.66 | 0.987637 |
Target: 5'- --cGGCGUGCACcgcuGGcGGUCGGugGcCAg -3' miRNA: 3'- gcuUUGCACGUG----UC-UCAGCCugCuGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 9803 | 0.66 | 0.986004 |
Target: 5'- ---cGCGUGCACAGuaacGUUGGGCcgGACc -3' miRNA: 3'- gcuuUGCACGUGUCu---CAGCCUG--CUGu -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 113836 | 0.66 | 0.984209 |
Target: 5'- gGAAcaGCG-GguCGGGGUCGGGCcGCAc -3' miRNA: 3'- gCUU--UGCaCguGUCUCAGCCUGcUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 33888 | 0.66 | 0.984209 |
Target: 5'- cCGAAAUGacuaGCGCcucGGGGUCGGuuuggugcaGCGACAc -3' miRNA: 3'- -GCUUUGCa---CGUG---UCUCAGCC---------UGCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 110160 | 0.66 | 0.984209 |
Target: 5'- ---cGCGUcGCGCuc-GUCGGGCGGCGu -3' miRNA: 3'- gcuuUGCA-CGUGucuCAGCCUGCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 59863 | 0.66 | 0.982246 |
Target: 5'- gCGAcGCGUGCAagcuGAGgacgagcuUCGcGGCGACAg -3' miRNA: 3'- -GCUuUGCACGUgu--CUC--------AGC-CUGCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 71982 | 0.66 | 0.982246 |
Target: 5'- -cGAACGUGCGCAGcauGUUGGcCGGa- -3' miRNA: 3'- gcUUUGCACGUGUCu--CAGCCuGCUgu -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 1042 | 0.66 | 0.982246 |
Target: 5'- cCGAGGC--GCACAGcGUUGGGCG-CAa -3' miRNA: 3'- -GCUUUGcaCGUGUCuCAGCCUGCuGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 50386 | 0.66 | 0.980104 |
Target: 5'- gCGGAccaGCGUGUACuuuuugCGGACGGCGc -3' miRNA: 3'- -GCUU---UGCACGUGucuca-GCCUGCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 98679 | 0.67 | 0.97873 |
Target: 5'- gGAGACGUGCauucGCAGAcacgccaauggacagGUgUGGACGGCc -3' miRNA: 3'- gCUUUGCACG----UGUCU---------------CA-GCCUGCUGu -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 126708 | 0.67 | 0.977776 |
Target: 5'- cCGAAGCG-GCGCAcGuccgCGGACGugAc -3' miRNA: 3'- -GCUUUGCaCGUGU-Cuca-GCCUGCugU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 16211 | 0.67 | 0.977776 |
Target: 5'- gCGGccCGUGUuu-GAGUCGGGCGAg- -3' miRNA: 3'- -GCUuuGCACGuguCUCAGCCUGCUgu -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 118375 | 0.67 | 0.977776 |
Target: 5'- -aGAGCGUGCGCAugca-GGACGACu -3' miRNA: 3'- gcUUUGCACGUGUcucagCCUGCUGu -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 128756 | 0.67 | 0.972527 |
Target: 5'- cCGgcGCGUGCACGccGU-GGGCGACc -3' miRNA: 3'- -GCuuUGCACGUGUcuCAgCCUGCUGu -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 96980 | 0.67 | 0.971668 |
Target: 5'- uGGAcguCGUGCGCAaguugcguugcgacGGGUgUGGGCGACAa -3' miRNA: 3'- gCUUu--GCACGUGU--------------CUCA-GCCUGCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 81888 | 0.67 | 0.96959 |
Target: 5'- --cGGCGUGCACGGucGUCGGcagcuUGACGc -3' miRNA: 3'- gcuUUGCACGUGUCu-CAGCCu----GCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 98499 | 0.67 | 0.96959 |
Target: 5'- aGAGACGaGUuuGGuGUgGGGCGACAg -3' miRNA: 3'- gCUUUGCaCGugUCuCAgCCUGCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 114484 | 0.67 | 0.966436 |
Target: 5'- aGAGAUGUGCgGCAGcacucugacgcGGUCGcGCGGCGg -3' miRNA: 3'- gCUUUGCACG-UGUC-----------UCAGCcUGCUGU- -5' |
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6781 | 5' | -51.7 | NC_001875.2 | + | 31151 | 0.67 | 0.966436 |
Target: 5'- aCGcgcCGcGCGCGGAGUCGGACa--- -3' miRNA: 3'- -GCuuuGCaCGUGUCUCAGCCUGcugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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