miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6783 5' -49.9 NC_001875.2 + 43903 0.66 0.993748
Target:  5'- uGCAGAGGCggggcguuugCGGUGGCAUcugGUaUUCc -3'
miRNA:   3'- gCGUUUCCG----------GUCGCCGUAa--CAaAAGu -5'
6783 5' -49.9 NC_001875.2 + 73042 0.66 0.992747
Target:  5'- uGCAGcuGGGCCAacuCGGCGcUGUUUUg- -3'
miRNA:   3'- gCGUU--UCCGGUc--GCCGUaACAAAAgu -5'
6783 5' -49.9 NC_001875.2 + 94082 0.66 0.990365
Target:  5'- gGCGcAGGuUUAGCGGCAgguugUGUUUUUu -3'
miRNA:   3'- gCGUuUCC-GGUCGCCGUa----ACAAAAGu -5'
6783 5' -49.9 NC_001875.2 + 130061 0.66 0.990365
Target:  5'- gGCGgcGGCggCGGCGGCAUgcucGUggUCAc -3'
miRNA:   3'- gCGUuuCCG--GUCGCCGUAa---CAaaAGU- -5'
6783 5' -49.9 NC_001875.2 + 63447 0.66 0.988964
Target:  5'- gGCGucggcGGCCAGCcgcgaGGCGUUGgUUUCc -3'
miRNA:   3'- gCGUuu---CCGGUCG-----CCGUAACaAAAGu -5'
6783 5' -49.9 NC_001875.2 + 18621 0.66 0.988964
Target:  5'- aGCAAAGGCgCAGCucGGU--UGUUgugUCGu -3'
miRNA:   3'- gCGUUUCCG-GUCG--CCGuaACAAa--AGU- -5'
6783 5' -49.9 NC_001875.2 + 109994 0.67 0.987408
Target:  5'- aCGCGc-GGUCGGUGGCGUUGa----- -3'
miRNA:   3'- -GCGUuuCCGGUCGCCGUAACaaaagu -5'
6783 5' -49.9 NC_001875.2 + 551 0.67 0.985689
Target:  5'- uGUGGAuguaGCCGGUGGCGUUGUgcaagucgUUCAa -3'
miRNA:   3'- gCGUUUc---CGGUCGCCGUAACAa-------AAGU- -5'
6783 5' -49.9 NC_001875.2 + 22590 0.67 0.983796
Target:  5'- gCGCGuuGGCCGGCcGGC--UGUacggUUUCGu -3'
miRNA:   3'- -GCGUuuCCGGUCG-CCGuaACA----AAAGU- -5'
6783 5' -49.9 NC_001875.2 + 92623 0.67 0.979449
Target:  5'- gCGCGAGcGGCUuGCGcGCGUUGUUg--- -3'
miRNA:   3'- -GCGUUU-CCGGuCGC-CGUAACAAaagu -5'
6783 5' -49.9 NC_001875.2 + 113618 0.68 0.976976
Target:  5'- gCGCAccgaacAGGUCAGCGGCgAUUGgg--CAa -3'
miRNA:   3'- -GCGUu-----UCCGGUCGCCG-UAACaaaaGU- -5'
6783 5' -49.9 NC_001875.2 + 124543 0.68 0.97429
Target:  5'- gGCGAgucgGGGUCGGCGGCGggGUc---- -3'
miRNA:   3'- gCGUU----UCCGGUCGCCGUaaCAaaagu -5'
6783 5' -49.9 NC_001875.2 + 6260 0.69 0.954956
Target:  5'- aCGCAaacGAGGCC-GUGGCAacguuugcuuuugauUUGUUUUUg -3'
miRNA:   3'- -GCGU---UUCCGGuCGCCGU---------------AACAAAAGu -5'
6783 5' -49.9 NC_001875.2 + 117881 0.69 0.948897
Target:  5'- aGCGuuGGCCAGCuuaGGCuGUUGUUUg-- -3'
miRNA:   3'- gCGUuuCCGGUCG---CCG-UAACAAAagu -5'
6783 5' -49.9 NC_001875.2 + 101791 0.69 0.944252
Target:  5'- uGCAAAGGCCGGCaagcaauuggccGGCGUUuacggUCGa -3'
miRNA:   3'- gCGUUUCCGGUCG------------CCGUAAcaaa-AGU- -5'
6783 5' -49.9 NC_001875.2 + 107848 0.7 0.939339
Target:  5'- uCGCGggcGAGGCCAGCGGCc--------- -3'
miRNA:   3'- -GCGU---UUCCGGUCGCCGuaacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 68929 0.7 0.934157
Target:  5'- uGCGAGGGCCGGCcggacGGguUUGUg---- -3'
miRNA:   3'- gCGUUUCCGGUCG-----CCguAACAaaagu -5'
6783 5' -49.9 NC_001875.2 + 131746 0.7 0.934157
Target:  5'- uGCAuuGGGCCGGCGGCGg-------- -3'
miRNA:   3'- gCGUu-UCCGGUCGCCGUaacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 26467 0.7 0.928702
Target:  5'- gCGCAAAacGGCCucGCGGuCGUaGUUUUCGc -3'
miRNA:   3'- -GCGUUU--CCGGu-CGCC-GUAaCAAAAGU- -5'
6783 5' -49.9 NC_001875.2 + 36341 0.7 0.928702
Target:  5'- gCGCGuguacgcGGCCGGCGGCGacuUUGUcgUCu -3'
miRNA:   3'- -GCGUuu-----CCGGUCGCCGU---AACAaaAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.