Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6783 | 5' | -49.9 | NC_001875.2 | + | 43903 | 0.66 | 0.993748 |
Target: 5'- uGCAGAGGCggggcguuugCGGUGGCAUcugGUaUUCc -3' miRNA: 3'- gCGUUUCCG----------GUCGCCGUAa--CAaAAGu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 73042 | 0.66 | 0.992747 |
Target: 5'- uGCAGcuGGGCCAacuCGGCGcUGUUUUg- -3' miRNA: 3'- gCGUU--UCCGGUc--GCCGUaACAAAAgu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 94082 | 0.66 | 0.990365 |
Target: 5'- gGCGcAGGuUUAGCGGCAgguugUGUUUUUu -3' miRNA: 3'- gCGUuUCC-GGUCGCCGUa----ACAAAAGu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 130061 | 0.66 | 0.990365 |
Target: 5'- gGCGgcGGCggCGGCGGCAUgcucGUggUCAc -3' miRNA: 3'- gCGUuuCCG--GUCGCCGUAa---CAaaAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 63447 | 0.66 | 0.988964 |
Target: 5'- gGCGucggcGGCCAGCcgcgaGGCGUUGgUUUCc -3' miRNA: 3'- gCGUuu---CCGGUCG-----CCGUAACaAAAGu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 18621 | 0.66 | 0.988964 |
Target: 5'- aGCAAAGGCgCAGCucGGU--UGUUgugUCGu -3' miRNA: 3'- gCGUUUCCG-GUCG--CCGuaACAAa--AGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 109994 | 0.67 | 0.987408 |
Target: 5'- aCGCGc-GGUCGGUGGCGUUGa----- -3' miRNA: 3'- -GCGUuuCCGGUCGCCGUAACaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 551 | 0.67 | 0.985689 |
Target: 5'- uGUGGAuguaGCCGGUGGCGUUGUgcaagucgUUCAa -3' miRNA: 3'- gCGUUUc---CGGUCGCCGUAACAa-------AAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 22590 | 0.67 | 0.983796 |
Target: 5'- gCGCGuuGGCCGGCcGGC--UGUacggUUUCGu -3' miRNA: 3'- -GCGUuuCCGGUCG-CCGuaACA----AAAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 92623 | 0.67 | 0.979449 |
Target: 5'- gCGCGAGcGGCUuGCGcGCGUUGUUg--- -3' miRNA: 3'- -GCGUUU-CCGGuCGC-CGUAACAAaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 113618 | 0.68 | 0.976976 |
Target: 5'- gCGCAccgaacAGGUCAGCGGCgAUUGgg--CAa -3' miRNA: 3'- -GCGUu-----UCCGGUCGCCG-UAACaaaaGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 124543 | 0.68 | 0.97429 |
Target: 5'- gGCGAgucgGGGUCGGCGGCGggGUc---- -3' miRNA: 3'- gCGUU----UCCGGUCGCCGUaaCAaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 6260 | 0.69 | 0.954956 |
Target: 5'- aCGCAaacGAGGCC-GUGGCAacguuugcuuuugauUUGUUUUUg -3' miRNA: 3'- -GCGU---UUCCGGuCGCCGU---------------AACAAAAGu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 117881 | 0.69 | 0.948897 |
Target: 5'- aGCGuuGGCCAGCuuaGGCuGUUGUUUg-- -3' miRNA: 3'- gCGUuuCCGGUCG---CCG-UAACAAAagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 101791 | 0.69 | 0.944252 |
Target: 5'- uGCAAAGGCCGGCaagcaauuggccGGCGUUuacggUCGa -3' miRNA: 3'- gCGUUUCCGGUCG------------CCGUAAcaaa-AGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 107848 | 0.7 | 0.939339 |
Target: 5'- uCGCGggcGAGGCCAGCGGCc--------- -3' miRNA: 3'- -GCGU---UUCCGGUCGCCGuaacaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 68929 | 0.7 | 0.934157 |
Target: 5'- uGCGAGGGCCGGCcggacGGguUUGUg---- -3' miRNA: 3'- gCGUUUCCGGUCG-----CCguAACAaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 131746 | 0.7 | 0.934157 |
Target: 5'- uGCAuuGGGCCGGCGGCGg-------- -3' miRNA: 3'- gCGUu-UCCGGUCGCCGUaacaaaagu -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 26467 | 0.7 | 0.928702 |
Target: 5'- gCGCAAAacGGCCucGCGGuCGUaGUUUUCGc -3' miRNA: 3'- -GCGUUU--CCGGu-CGCC-GUAaCAAAAGU- -5' |
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6783 | 5' | -49.9 | NC_001875.2 | + | 36341 | 0.7 | 0.928702 |
Target: 5'- gCGCGuguacgcGGCCGGCGGCGacuUUGUcgUCu -3' miRNA: 3'- -GCGUuu-----CCGGUCGCCGU---AACAaaAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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