miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6784 3' -54.9 NC_001875.2 + 61612 0.66 0.92335
Target:  5'- cGGcGCUUCg--GGCUGUGUCGgcggcGCCUCGg -3'
miRNA:   3'- -UC-CGAAGaugUUGACGCGGC-----UGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 99271 0.66 0.92335
Target:  5'- gAGGUgcgCgcgGCAcuGCUGCaGCCGcuCCUCGg -3'
miRNA:   3'- -UCCGaa-Ga--UGU--UGACG-CGGCu-GGAGC- -5'
6784 3' -54.9 NC_001875.2 + 69230 0.66 0.91764
Target:  5'- cGGGCg---ACGcgcGCUGUGCCGACUUg- -3'
miRNA:   3'- -UCCGaagaUGU---UGACGCGGCUGGAgc -5'
6784 3' -54.9 NC_001875.2 + 72441 0.66 0.91764
Target:  5'- uGGCUUCguuCAAUUGCauGuuGACCgCGg -3'
miRNA:   3'- uCCGAAGau-GUUGACG--CggCUGGaGC- -5'
6784 3' -54.9 NC_001875.2 + 129359 0.66 0.911683
Target:  5'- cGGCcgUUACAAUUgauacgaaaaaGCGCCGACC-CGc -3'
miRNA:   3'- uCCGaaGAUGUUGA-----------CGCGGCUGGaGC- -5'
6784 3' -54.9 NC_001875.2 + 89499 0.66 0.911683
Target:  5'- -uGCcgCUGCGACUGCGCUuccGCCUgGg -3'
miRNA:   3'- ucCGaaGAUGUUGACGCGGc--UGGAgC- -5'
6784 3' -54.9 NC_001875.2 + 64816 0.66 0.911683
Target:  5'- cGuGUUUUUGCGGCUGCGCUuGCgCUUGa -3'
miRNA:   3'- uC-CGAAGAUGUUGACGCGGcUG-GAGC- -5'
6784 3' -54.9 NC_001875.2 + 88077 0.66 0.905479
Target:  5'- cGGGCcgC-ACAACUGCGUCGugUUg- -3'
miRNA:   3'- -UCCGaaGaUGUUGACGCGGCugGAgc -5'
6784 3' -54.9 NC_001875.2 + 4925 0.66 0.905479
Target:  5'- uGGCaacUUCUugcgggGCAGCacuaacacuuUGCGCCG-CCUCGg -3'
miRNA:   3'- uCCG---AAGA------UGUUG----------ACGCGGCuGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 130945 0.67 0.892344
Target:  5'- cGG-UUCguggcCGACUGCGCCGuuCUCGc -3'
miRNA:   3'- uCCgAAGau---GUUGACGCGGCugGAGC- -5'
6784 3' -54.9 NC_001875.2 + 82076 0.67 0.892344
Target:  5'- gGGGCUUugcggcCUACAuACUGgGCCGcACCagCGa -3'
miRNA:   3'- -UCCGAA------GAUGU-UGACgCGGC-UGGa-GC- -5'
6784 3' -54.9 NC_001875.2 + 126788 0.67 0.892344
Target:  5'- cGGCUg-UGCaAGCUGCGgCGGCUUUGc -3'
miRNA:   3'- uCCGAagAUG-UUGACGCgGCUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 69572 0.67 0.892344
Target:  5'- uGGCggacCUGaCAACggGCGCUGACC-CGg -3'
miRNA:   3'- uCCGaa--GAU-GUUGa-CGCGGCUGGaGC- -5'
6784 3' -54.9 NC_001875.2 + 87613 0.67 0.87826
Target:  5'- cGGGUUUCUugAAC-GUGCCGAauCUUUGu -3'
miRNA:   3'- -UCCGAAGAugUUGaCGCGGCU--GGAGC- -5'
6784 3' -54.9 NC_001875.2 + 128006 0.67 0.87826
Target:  5'- gAGGCUgcggccgCgcCGGCgUGCGCCGACgaCGg -3'
miRNA:   3'- -UCCGAa------GauGUUG-ACGCGGCUGgaGC- -5'
6784 3' -54.9 NC_001875.2 + 95244 0.67 0.87826
Target:  5'- aGGGCgacgCgcaGCGGCUGCGCCGcAUUUUGc -3'
miRNA:   3'- -UCCGaa--Ga--UGUUGACGCGGC-UGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 50646 0.67 0.870873
Target:  5'- uGGCaauuaaauaaugUUCUcCAGCaUGCGCUGGCCgUCGg -3'
miRNA:   3'- uCCG------------AAGAuGUUG-ACGCGGCUGG-AGC- -5'
6784 3' -54.9 NC_001875.2 + 29242 0.67 0.870873
Target:  5'- cGGCUUCcgugGCAuACUGCgggugcgcggccGCCGACCgCGc -3'
miRNA:   3'- uCCGAAGa---UGU-UGACG------------CGGCUGGaGC- -5'
6784 3' -54.9 NC_001875.2 + 57691 0.67 0.870873
Target:  5'- uGGCg---GCGGCggGCGCCGcgcCCUCGa -3'
miRNA:   3'- uCCGaagaUGUUGa-CGCGGCu--GGAGC- -5'
6784 3' -54.9 NC_001875.2 + 2371 0.67 0.863263
Target:  5'- cGGCauguuggagUCcgACAGCUGCGCCcaguGCCUCu -3'
miRNA:   3'- uCCGa--------AGa-UGUUGACGCGGc---UGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.