miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6784 5' -55.1 NC_001875.2 + 19442 0.66 0.939483
Target:  5'- gGCCGGGAACGuCGGGgaucUCGGggagcucaggcucggGCGCu -3'
miRNA:   3'- -UGGCUCUUGCuGCUCac--GGCCa--------------UGCG- -5'
6784 5' -55.1 NC_001875.2 + 114710 0.66 0.939008
Target:  5'- cGCUcucGAACGGCGuGUGCuauuuuuggCGGUGCGUc -3'
miRNA:   3'- -UGGcu-CUUGCUGCuCACG---------GCCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 61574 0.66 0.939008
Target:  5'- uGCUGAGuucCGACGAgGUGgaGGUAgCGCc -3'
miRNA:   3'- -UGGCUCuu-GCUGCU-CACggCCAU-GCG- -5'
6784 5' -55.1 NC_001875.2 + 5338 0.66 0.939008
Target:  5'- cGCCGAGuGCGGgGcGGUGCUGGU-Ca- -3'
miRNA:   3'- -UGGCUCuUGCUgC-UCACGGCCAuGcg -5'
6784 5' -55.1 NC_001875.2 + 122139 0.66 0.934134
Target:  5'- gACCGGccACGAUGGGUGCac--GCGCa -3'
miRNA:   3'- -UGGCUcuUGCUGCUCACGgccaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 128768 0.66 0.934134
Target:  5'- cGCCGuGGGCGACcccGGcgcGCCGcUGCGCg -3'
miRNA:   3'- -UGGCuCUUGCUGc--UCa--CGGCcAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 68895 0.66 0.934134
Target:  5'- cGCCGcGucCGGCGAGUGUCGaGUcaACGa -3'
miRNA:   3'- -UGGCuCuuGCUGCUCACGGC-CA--UGCg -5'
6784 5' -55.1 NC_001875.2 + 31960 0.66 0.934134
Target:  5'- uGCCGGcGACGACGAacgcGUG-UGGcGCGCg -3'
miRNA:   3'- -UGGCUcUUGCUGCU----CACgGCCaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 10284 0.66 0.929021
Target:  5'- cGCCGuGGugGuCGAGgccuuUGCCGacUACGCg -3'
miRNA:   3'- -UGGCuCUugCuGCUC-----ACGGCc-AUGCG- -5'
6784 5' -55.1 NC_001875.2 + 70883 0.66 0.924214
Target:  5'- uUCGAGAACaaucguucugguaaaGCGAGUGCuauuuuuagCGGUGCGUc -3'
miRNA:   3'- uGGCUCUUGc--------------UGCUCACG---------GCCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 3160 0.66 0.923668
Target:  5'- -gCGucGGGCGGCGAGUaggugaGCCGGcggccGCGCa -3'
miRNA:   3'- ugGCu-CUUGCUGCUCA------CGGCCa----UGCG- -5'
6784 5' -55.1 NC_001875.2 + 103315 0.66 0.923668
Target:  5'- cACCGAaAACGGCGuuuucGUGUaCGGUgugACGCu -3'
miRNA:   3'- -UGGCUcUUGCUGCu----CACG-GCCA---UGCG- -5'
6784 5' -55.1 NC_001875.2 + 86386 0.66 0.923668
Target:  5'- gGCUGcGGGCGcCGAGcGCCGaGUucgACGCg -3'
miRNA:   3'- -UGGCuCUUGCuGCUCaCGGC-CA---UGCG- -5'
6784 5' -55.1 NC_001875.2 + 52010 0.66 0.923668
Target:  5'- aGCUGAGcACG-CaGGUGUCGGacgUGCGCg -3'
miRNA:   3'- -UGGCUCuUGCuGcUCACGGCC---AUGCG- -5'
6784 5' -55.1 NC_001875.2 + 35356 0.66 0.918074
Target:  5'- gGCCGAGAuacacgggcAgGugGAGcaGCUGGagGCGCu -3'
miRNA:   3'- -UGGCUCU---------UgCugCUCa-CGGCCa-UGCG- -5'
6784 5' -55.1 NC_001875.2 + 16231 0.66 0.918074
Target:  5'- -gCGAGugugacugcGGCGACGAG-GCCGucACGCg -3'
miRNA:   3'- ugGCUC---------UUGCUGCUCaCGGCcaUGCG- -5'
6784 5' -55.1 NC_001875.2 + 125329 0.66 0.918074
Target:  5'- gACCGGuGGACGGCGGccagcGUGuuGGcGCGg -3'
miRNA:   3'- -UGGCU-CUUGCUGCU-----CACggCCaUGCg -5'
6784 5' -55.1 NC_001875.2 + 70820 0.66 0.912836
Target:  5'- uUCGAGAAUaaucguucugguaaaGCGAGUGCuauuuuugCGGUGCGCc -3'
miRNA:   3'- uGGCUCUUGc--------------UGCUCACG--------GCCAUGCG- -5'
6784 5' -55.1 NC_001875.2 + 50523 0.66 0.912242
Target:  5'- gGCaCGAuGACGAgGAGgaggcgccGCCGGcgGCGCg -3'
miRNA:   3'- -UG-GCUcUUGCUgCUCa-------CGGCCa-UGCG- -5'
6784 5' -55.1 NC_001875.2 + 85232 0.66 0.912242
Target:  5'- cGCCGcauguCGACGAGcGCgGGUuccGCGCu -3'
miRNA:   3'- -UGGCucuu-GCUGCUCaCGgCCA---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.