Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6785 | 3' | -54.5 | NC_001875.2 | + | 100854 | 0.66 | 0.938988 |
Target: 5'- aGCUCGUCugcgGCCAGGUcGUAUucGUGa -3' miRNA: 3'- gCGGGCAG----CGGUCCGuCAUGuuUACg -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 16213 | 0.66 | 0.938988 |
Target: 5'- gGCCCGUguuugaGUCGGGCgAGUGUGAcUGCg -3' miRNA: 3'- gCGGGCAg-----CGGUCCG-UCAUGUUuACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 16764 | 0.66 | 0.938988 |
Target: 5'- gGUgCGUCaCCGGGUAGUAUAuaaaGCg -3' miRNA: 3'- gCGgGCAGcGGUCCGUCAUGUuua-CG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 79824 | 0.66 | 0.938988 |
Target: 5'- uGCCCGgcaugguggUGCCagcaagaagGGGCAGUugGAAUa- -3' miRNA: 3'- gCGGGCa--------GCGG---------UCCGUCAugUUUAcg -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 113783 | 0.66 | 0.92335 |
Target: 5'- gCGCCCGaaGCgGcGGCAGUACGc---- -3' miRNA: 3'- -GCGGGCagCGgU-CCGUCAUGUuuacg -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 42564 | 0.66 | 0.928811 |
Target: 5'- gCGCCCagccgCGCCAGGuCGGcGCAcgcGCg -3' miRNA: 3'- -GCGGGca---GCGGUCC-GUCaUGUuuaCG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 87946 | 0.66 | 0.928811 |
Target: 5'- aCGCCCG-CGCCucuGCAagacCAAAUGCc -3' miRNA: 3'- -GCGGGCaGCGGuc-CGUcau-GUUUACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 10345 | 0.66 | 0.934024 |
Target: 5'- gCGCCCGUgauucaaauugCGCCGGGC--UACGGccugGCc -3' miRNA: 3'- -GCGGGCA-----------GCGGUCCGucAUGUUua--CG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 65124 | 0.66 | 0.91764 |
Target: 5'- aGCC--UCGCCGuGCAGUACAuGGUGUc -3' miRNA: 3'- gCGGgcAGCGGUcCGUCAUGU-UUACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 111906 | 0.66 | 0.934024 |
Target: 5'- gCGCCgGcCGCUccguguacGGGcCGGUGCAGcUGCc -3' miRNA: 3'- -GCGGgCaGCGG--------UCC-GUCAUGUUuACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 82163 | 0.66 | 0.92335 |
Target: 5'- uGCUgGcCGaCGGGCGGUAC--GUGCg -3' miRNA: 3'- gCGGgCaGCgGUCCGUCAUGuuUACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 42995 | 0.66 | 0.92279 |
Target: 5'- gCGgCCGUUGCgaAGGUGGccuccauUGCGAGUGCc -3' miRNA: 3'- -GCgGGCAGCGg-UCCGUC-------AUGUUUACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 80877 | 0.66 | 0.938988 |
Target: 5'- gGCgCG-CGCCAaagaguGGCAGaGCAAGUcGCg -3' miRNA: 3'- gCGgGCaGCGGU------CCGUCaUGUUUA-CG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 34092 | 0.66 | 0.92335 |
Target: 5'- aCGCCCGU-GCCGGGguuGcACGAGcGCg -3' miRNA: 3'- -GCGGGCAgCGGUCCgu-CaUGUUUaCG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 62756 | 0.66 | 0.911683 |
Target: 5'- gGCCCG-CGCCguugaacgcgcAGG-GGUGCGuuUGCa -3' miRNA: 3'- gCGGGCaGCGG-----------UCCgUCAUGUuuACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 7131 | 0.66 | 0.938988 |
Target: 5'- aCGCgCCGcUUGCCAGGCGcGUuggcCGAAggGCc -3' miRNA: 3'- -GCG-GGC-AGCGGUCCGU-CAu---GUUUa-CG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 23628 | 0.66 | 0.911683 |
Target: 5'- uGCCCGUgGUCuuGCuGaGCGGGUGCu -3' miRNA: 3'- gCGGGCAgCGGucCGuCaUGUUUACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 83403 | 0.66 | 0.911683 |
Target: 5'- gGUUgGUCGCCAuGGCGccGCAAAacUGCg -3' miRNA: 3'- gCGGgCAGCGGU-CCGUcaUGUUU--ACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 13790 | 0.66 | 0.911683 |
Target: 5'- gCGCCCGaauaaauuugacUgGCCAcgcgauccauGGUGGUGCAAcAUGCa -3' miRNA: 3'- -GCGGGC------------AgCGGU----------CCGUCAUGUU-UACG- -5' |
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6785 | 3' | -54.5 | NC_001875.2 | + | 39217 | 0.66 | 0.91764 |
Target: 5'- cCGCCaCGUCGUCGGGUuuuccgGCAuucGCg -3' miRNA: 3'- -GCGG-GCAGCGGUCCGuca---UGUuuaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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