miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 3' -54.5 NC_001875.2 + 7131 0.66 0.938988
Target:  5'- aCGCgCCGcUUGCCAGGCGcGUuggcCGAAggGCc -3'
miRNA:   3'- -GCG-GGC-AGCGGUCCGU-CAu---GUUUa-CG- -5'
6785 3' -54.5 NC_001875.2 + 9954 0.66 0.938988
Target:  5'- uGCgCGUCGacgaCAGcGUGGUGCAAuugacggcGUGCa -3'
miRNA:   3'- gCGgGCAGCg---GUC-CGUCAUGUU--------UACG- -5'
6785 3' -54.5 NC_001875.2 + 10345 0.66 0.934024
Target:  5'- gCGCCCGUgauucaaauugCGCCGGGC--UACGGccugGCc -3'
miRNA:   3'- -GCGGGCA-----------GCGGUCCGucAUGUUua--CG- -5'
6785 3' -54.5 NC_001875.2 + 12394 0.68 0.836651
Target:  5'- cCGCUCGUCGUCGGGCcgcuGUuugccgcgcgccaaGCAGGccguUGCg -3'
miRNA:   3'- -GCGGGCAGCGGUCCGu---CA--------------UGUUU----ACG- -5'
6785 3' -54.5 NC_001875.2 + 13551 0.69 0.804328
Target:  5'- -cCCUGUCGgcguacaaCAGGCAGUGCGAAaguagaucuUGCa -3'
miRNA:   3'- gcGGGCAGCg-------GUCCGUCAUGUUU---------ACG- -5'
6785 3' -54.5 NC_001875.2 + 13790 0.66 0.911683
Target:  5'- gCGCCCGaauaaauuugacUgGCCAcgcgauccauGGUGGUGCAAcAUGCa -3'
miRNA:   3'- -GCGGGC------------AgCGGU----------CCGUCAUGUU-UACG- -5'
6785 3' -54.5 NC_001875.2 + 16213 0.66 0.938988
Target:  5'- gGCCCGUguuugaGUCGGGCgAGUGUGAcUGCg -3'
miRNA:   3'- gCGGGCAg-----CGGUCCG-UCAUGUUuACG- -5'
6785 3' -54.5 NC_001875.2 + 16764 0.66 0.938988
Target:  5'- gGUgCGUCaCCGGGUAGUAUAuaaaGCg -3'
miRNA:   3'- gCGgGCAGcGGUCCGUCAUGUuua-CG- -5'
6785 3' -54.5 NC_001875.2 + 22707 0.67 0.899032
Target:  5'- uCGCCCuagucGUCGCCAcuguGGCc-UACuuGUGCg -3'
miRNA:   3'- -GCGGG-----CAGCGGU----CCGucAUGuuUACG- -5'
6785 3' -54.5 NC_001875.2 + 23628 0.66 0.911683
Target:  5'- uGCCCGUgGUCuuGCuGaGCGGGUGCu -3'
miRNA:   3'- gCGGGCAgCGGucCGuCaUGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 26329 0.68 0.847401
Target:  5'- aGCCgUGUCGCCAaGCAGUguguuuaggGCAAAggugGCc -3'
miRNA:   3'- gCGG-GCAGCGGUcCGUCA---------UGUUUa---CG- -5'
6785 3' -54.5 NC_001875.2 + 27868 0.66 0.938988
Target:  5'- cCGCCCaUUuCCAuGGCAGacuCGAAUGCc -3'
miRNA:   3'- -GCGGGcAGcGGU-CCGUCau-GUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 31315 0.69 0.813301
Target:  5'- -aCCUGUCGCU-GGCGGUGCAAcaaaaauuUGCc -3'
miRNA:   3'- gcGGGCAGCGGuCCGUCAUGUUu-------ACG- -5'
6785 3' -54.5 NC_001875.2 + 32542 0.66 0.938988
Target:  5'- aGCCCGUauacaacgcCGCCgaGGaGCGGcUGCAgcAGUGCc -3'
miRNA:   3'- gCGGGCA---------GCGG--UC-CGUC-AUGU--UUACG- -5'
6785 3' -54.5 NC_001875.2 + 33345 0.68 0.863263
Target:  5'- uCGCCCGgcaGCCAaucacgcacgcGGCAGUcGCAAAagaaGCa -3'
miRNA:   3'- -GCGGGCag-CGGU-----------CCGUCA-UGUUUa---CG- -5'
6785 3' -54.5 NC_001875.2 + 33622 0.77 0.373848
Target:  5'- aGUCCGUcggcCGCCGGGCAGUuGCAGccGCu -3'
miRNA:   3'- gCGGGCA----GCGGUCCGUCA-UGUUuaCG- -5'
6785 3' -54.5 NC_001875.2 + 34092 0.66 0.92335
Target:  5'- aCGCCCGU-GCCGGGguuGcACGAGcGCg -3'
miRNA:   3'- -GCGGGCAgCGGUCCgu-CaUGUUUaCG- -5'
6785 3' -54.5 NC_001875.2 + 35051 0.75 0.472515
Target:  5'- gGCCCGUCG-CAGGaGGUGCccGUGCu -3'
miRNA:   3'- gCGGGCAGCgGUCCgUCAUGuuUACG- -5'
6785 3' -54.5 NC_001875.2 + 35621 0.69 0.792421
Target:  5'- gCGCCCaaCGCCgacgcggacuaucuGGcGCAGcGCAAGUGCg -3'
miRNA:   3'- -GCGGGcaGCGG--------------UC-CGUCaUGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 37092 0.67 0.905479
Target:  5'- aCGacaCCGcCGCguGGguGUGCGGGcGCg -3'
miRNA:   3'- -GCg--GGCaGCGguCCguCAUGUUUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.