miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 3' -54.5 NC_001875.2 + 77133 1.12 0.002015
Target:  5'- aCGCCCGUCGCCAGGCAGUACAAAUGCu -3'
miRNA:   3'- -GCGGGCAGCGGUCCGUCAUGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 63007 0.81 0.221821
Target:  5'- gCGaCCCGUcCGCCAGGCAGcGCAAAUacaGCg -3'
miRNA:   3'- -GC-GGGCA-GCGGUCCGUCaUGUUUA---CG- -5'
6785 3' -54.5 NC_001875.2 + 96339 0.78 0.333854
Target:  5'- cCGCCCGUUGCC-GGCAGUugucAUGCc -3'
miRNA:   3'- -GCGGGCAGCGGuCCGUCAuguuUACG- -5'
6785 3' -54.5 NC_001875.2 + 33622 0.77 0.373848
Target:  5'- aGUCCGUcggcCGCCGGGCAGUuGCAGccGCu -3'
miRNA:   3'- gCGGGCA----GCGGUCCGUCA-UGUUuaCG- -5'
6785 3' -54.5 NC_001875.2 + 56916 0.76 0.435047
Target:  5'- gGCuuGUCGCCuuuaAGGCGGccGCGAAUGUa -3'
miRNA:   3'- gCGggCAGCGG----UCCGUCa-UGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 35051 0.75 0.472515
Target:  5'- gGCCCGUCG-CAGGaGGUGCccGUGCu -3'
miRNA:   3'- gCGGGCAGCgGUCCgUCAUGuuUACG- -5'
6785 3' -54.5 NC_001875.2 + 82995 0.73 0.613858
Target:  5'- cCGCUCGUCGCC-GGCGGgcuugaAGcgGCg -3'
miRNA:   3'- -GCGGGCAGCGGuCCGUCaug---UUuaCG- -5'
6785 3' -54.5 NC_001875.2 + 65741 0.71 0.676362
Target:  5'- cCGCCCGcCGCgCGGGCcucggcGUAUucGUGCg -3'
miRNA:   3'- -GCGGGCaGCG-GUCCGu-----CAUGuuUACG- -5'
6785 3' -54.5 NC_001875.2 + 104132 0.71 0.696991
Target:  5'- uGCCCGUCGCCucguuGuGCGGcucaaACGGcgGCg -3'
miRNA:   3'- gCGGGCAGCGGu----C-CGUCa----UGUUuaCG- -5'
6785 3' -54.5 NC_001875.2 + 87850 0.71 0.696991
Target:  5'- gCGCCCGUCGggcuguCCGuGGCGGUcgGCGAccAUGUg -3'
miRNA:   3'- -GCGGGCAGC------GGU-CCGUCA--UGUU--UACG- -5'
6785 3' -54.5 NC_001875.2 + 57441 0.71 0.707226
Target:  5'- uCGUCCGUUugcaCCAGGCAGUACcc--GCg -3'
miRNA:   3'- -GCGGGCAGc---GGUCCGUCAUGuuuaCG- -5'
6785 3' -54.5 NC_001875.2 + 124584 0.71 0.710284
Target:  5'- gCGaCCCG-CGCCAGGCcgcugcagcgcggaaAGUGCAugaaccggccaauGAUGCc -3'
miRNA:   3'- -GC-GGGCaGCGGUCCG---------------UCAUGU-------------UUACG- -5'
6785 3' -54.5 NC_001875.2 + 102062 0.71 0.727487
Target:  5'- aCGCCCGUCcacCCGcGGCcGUACAug-GCg -3'
miRNA:   3'- -GCGGGCAGc--GGU-CCGuCAUGUuuaCG- -5'
6785 3' -54.5 NC_001875.2 + 95217 0.7 0.757212
Target:  5'- aGCUCGUgUGCCGcgaucGGUGGUGCAAggGCg -3'
miRNA:   3'- gCGGGCA-GCGGU-----CCGUCAUGUUuaCG- -5'
6785 3' -54.5 NC_001875.2 + 94864 0.7 0.757212
Target:  5'- gGCCaCGUaCGCCAGGCGcGUuuGAAacUGCu -3'
miRNA:   3'- gCGG-GCA-GCGGUCCGU-CAugUUU--ACG- -5'
6785 3' -54.5 NC_001875.2 + 105239 0.7 0.757212
Target:  5'- gGCCUGUcauggCGCCAGGU-GUGCGGGcGCu -3'
miRNA:   3'- gCGGGCA-----GCGGUCCGuCAUGUUUaCG- -5'
6785 3' -54.5 NC_001875.2 + 58039 0.7 0.766904
Target:  5'- cCGCUCGUCGCgCAGGuUGGUuuu-GUGCa -3'
miRNA:   3'- -GCGGGCAGCG-GUCC-GUCAuguuUACG- -5'
6785 3' -54.5 NC_001875.2 + 45933 0.7 0.766904
Target:  5'- uGCUCGUCGCCagaaAGGCAaauuuuGUGgccaacCAGGUGCg -3'
miRNA:   3'- gCGGGCAGCGG----UCCGU------CAU------GUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 49686 0.7 0.766904
Target:  5'- cCGCCCGUCgGCCAGcaaaGCGGacuCGAGguggGCg -3'
miRNA:   3'- -GCGGGCAG-CGGUC----CGUCau-GUUUa---CG- -5'
6785 3' -54.5 NC_001875.2 + 98259 0.7 0.776471
Target:  5'- cCGCCaCGUCGCCgacucGGGCauGGUGCcccGcgGCg -3'
miRNA:   3'- -GCGG-GCAGCGG-----UCCG--UCAUGu--UuaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.