miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 3' -54.5 NC_001875.2 + 38545 0.67 0.885418
Target:  5'- aGCUCGUgGCCGGGUuGcUGCGucgGCg -3'
miRNA:   3'- gCGGGCAgCGGUCCGuC-AUGUuuaCG- -5'
6785 3' -54.5 NC_001875.2 + 110296 0.68 0.830727
Target:  5'- uGcCCCGUCGCCgAGaCGGUGCuggacUGCg -3'
miRNA:   3'- gC-GGGCAGCGG-UCcGUCAUGuuu--ACG- -5'
6785 3' -54.5 NC_001875.2 + 12394 0.68 0.836651
Target:  5'- cCGCUCGUCGUCGGGCcgcuGUuugccgcgcgccaaGCAGGccguUGCg -3'
miRNA:   3'- -GCGGGCAGCGGUCCGu---CA--------------UGUUU----ACG- -5'
6785 3' -54.5 NC_001875.2 + 49555 0.68 0.839162
Target:  5'- gGCCCGaCGCCAGaauuGUAGUggccaaGCAGcUGCg -3'
miRNA:   3'- gCGGGCaGCGGUC----CGUCA------UGUUuACG- -5'
6785 3' -54.5 NC_001875.2 + 26329 0.68 0.847401
Target:  5'- aGCCgUGUCGCCAaGCAGUguguuuaggGCAAAggugGCc -3'
miRNA:   3'- gCGG-GCAGCGGUcCGUCA---------UGUUUa---CG- -5'
6785 3' -54.5 NC_001875.2 + 50021 0.68 0.855437
Target:  5'- gCGCgUgGUCGCCGGGCGGcgagGCGGccgGCc -3'
miRNA:   3'- -GCG-GgCAGCGGUCCGUCa---UGUUua-CG- -5'
6785 3' -54.5 NC_001875.2 + 33345 0.68 0.863263
Target:  5'- uCGCCCGgcaGCCAaucacgcacgcGGCAGUcGCAAAagaaGCa -3'
miRNA:   3'- -GCGGGCag-CGGU-----------CCGUCA-UGUUUa---CG- -5'
6785 3' -54.5 NC_001875.2 + 102588 0.68 0.870873
Target:  5'- gCGUCCaGcCGCCAauggacGGCAGgauuuuCAAAUGCg -3'
miRNA:   3'- -GCGGG-CaGCGGU------CCGUCau----GUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 80305 0.67 0.87826
Target:  5'- aGCgCCGUCGCCAGcGC-GUcCGAGucguUGCc -3'
miRNA:   3'- gCG-GGCAGCGGUC-CGuCAuGUUU----ACG- -5'
6785 3' -54.5 NC_001875.2 + 48379 0.68 0.830727
Target:  5'- gCGCCCGUC-CgAcGCGGcgACAGGUGCc -3'
miRNA:   3'- -GCGGGCAGcGgUcCGUCa-UGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 31315 0.69 0.813301
Target:  5'- -aCCUGUCGCU-GGCGGUGCAAcaaaaauuUGCc -3'
miRNA:   3'- gcGGGCAGCGGuCCGUCAUGUUu-------ACG- -5'
6785 3' -54.5 NC_001875.2 + 71539 0.69 0.812411
Target:  5'- cCGCUgcgacgCGUCGCCu-GCAGUgucgccaACAAGUGCg -3'
miRNA:   3'- -GCGG------GCAGCGGucCGUCA-------UGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 56916 0.76 0.435047
Target:  5'- gGCuuGUCGCCuuuaAGGCGGccGCGAAUGUa -3'
miRNA:   3'- gCGggCAGCGG----UCCGUCa-UGUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 35051 0.75 0.472515
Target:  5'- gGCCCGUCG-CAGGaGGUGCccGUGCu -3'
miRNA:   3'- gCGGGCAGCgGUCCgUCAUGuuUACG- -5'
6785 3' -54.5 NC_001875.2 + 65741 0.71 0.676362
Target:  5'- cCGCCCGcCGCgCGGGCcucggcGUAUucGUGCg -3'
miRNA:   3'- -GCGGGCaGCG-GUCCGu-----CAUGuuUACG- -5'
6785 3' -54.5 NC_001875.2 + 102062 0.71 0.727487
Target:  5'- aCGCCCGUCcacCCGcGGCcGUACAug-GCg -3'
miRNA:   3'- -GCGGGCAGc--GGU-CCGuCAUGUuuaCG- -5'
6785 3' -54.5 NC_001875.2 + 105239 0.7 0.757212
Target:  5'- gGCCUGUcauggCGCCAGGU-GUGCGGGcGCu -3'
miRNA:   3'- gCGGGCA-----GCGGUCCGuCAUGUUUaCG- -5'
6785 3' -54.5 NC_001875.2 + 45933 0.7 0.766904
Target:  5'- uGCUCGUCGCCagaaAGGCAaauuuuGUGgccaacCAGGUGCg -3'
miRNA:   3'- gCGGGCAGCGG----UCCGU------CAU------GUUUACG- -5'
6785 3' -54.5 NC_001875.2 + 98259 0.7 0.776471
Target:  5'- cCGCCaCGUCGCCgacucGGGCauGGUGCcccGcgGCg -3'
miRNA:   3'- -GCGG-GCAGCGG-----UCCG--UCAUGu--UuaCG- -5'
6785 3' -54.5 NC_001875.2 + 35621 0.69 0.792421
Target:  5'- gCGCCCaaCGCCgacgcggacuaucuGGcGCAGcGCAAGUGCg -3'
miRNA:   3'- -GCGGGcaGCGG--------------UC-CGUCaUGUUUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.