miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6786 5' -55.3 NC_001875.2 + 75543 1.11 0.002041
Target:  5'- cGCCAUACGCUUGGGCGCCAUCGACGAa -3'
miRNA:   3'- -CGGUAUGCGAACCCGCGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 81046 0.68 0.811977
Target:  5'- uCCAUAUGCaagcacggcguaaUGGuGCGCCG-CGACGAg -3'
miRNA:   3'- cGGUAUGCGa------------ACC-CGCGGUaGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 26613 0.68 0.818989
Target:  5'- cGCCAUGacaggcCGCccaagcaugacgaGGGCGCCA-CGGCGAc -3'
miRNA:   3'- -CGGUAU------GCGaa-----------CCCGCGGUaGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 9030 0.66 0.923958
Target:  5'- cGCCuUGCGUUUGGaGCcGCCGgccgCGcCGGu -3'
miRNA:   3'- -CGGuAUGCGAACC-CG-CGGUa---GCuGCU- -5'
6786 5' -55.3 NC_001875.2 + 7376 0.72 0.608036
Target:  5'- aGCCGUACaGCcUGGGCGaucuaAUUGGCGAc -3'
miRNA:   3'- -CGGUAUG-CGaACCCGCgg---UAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 18282 0.72 0.608036
Target:  5'- cGCCGUGCGCgaccGCGCCGUUGAUu- -3'
miRNA:   3'- -CGGUAUGCGaaccCGCGGUAGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 19865 0.71 0.680262
Target:  5'- gGCCGcguCGCggcgcGGGCGCCGUUuGCGAa -3'
miRNA:   3'- -CGGUau-GCGaa---CCCGCGGUAGcUGCU- -5'
6786 5' -55.3 NC_001875.2 + 57134 0.71 0.680262
Target:  5'- cGUgGUGuagUGCgUGGGCGCCAaCGGCGGg -3'
miRNA:   3'- -CGgUAU---GCGaACCCGCGGUaGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 61606 0.7 0.74069
Target:  5'- cGCCGgcgGCGCUUcGGGCugUGUCGGCGGc -3'
miRNA:   3'- -CGGUa--UGCGAA-CCCGcgGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 114917 0.68 0.806648
Target:  5'- cGCCgAUGCGCUcaaacacgaGGcccGCGCCGUCGuCGAu -3'
miRNA:   3'- -CGG-UAUGCGAa--------CC---CGCGGUAGCuGCU- -5'
6786 5' -55.3 NC_001875.2 + 4681 0.69 0.76016
Target:  5'- uCCAcaaUGCGCUcGGGCGCCGUaaaaaGAgGGc -3'
miRNA:   3'- cGGU---AUGCGAaCCCGCGGUAg----CUgCU- -5'
6786 5' -55.3 NC_001875.2 + 125851 0.7 0.739706
Target:  5'- cCCAUucggcacGCGC-UGGGCcugcCCGUCGGCGAc -3'
miRNA:   3'- cGGUA-------UGCGaACCCGc---GGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 17833 0.82 0.184169
Target:  5'- cGCCAUGCGCgaGGGCGCCgaaaacgaggugcaGUCGGcCGAg -3'
miRNA:   3'- -CGGUAUGCGaaCCCGCGG--------------UAGCU-GCU- -5'
6786 5' -55.3 NC_001875.2 + 92790 0.69 0.797637
Target:  5'- gGCCAUGCGCUUGcgguacaGCGCCccgcCGAUGc -3'
miRNA:   3'- -CGGUAUGCGAACc------CGCGGua--GCUGCu -5'
6786 5' -55.3 NC_001875.2 + 100882 0.75 0.431462
Target:  5'- cGCagcGCGCgcgUGGGCGCCAU-GGCGAg -3'
miRNA:   3'- -CGguaUGCGa--ACCCGCGGUAgCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 82239 0.7 0.730805
Target:  5'- aGCCGcuUGCGCgcuggUGGuaGCGCuCGUCGGCGc -3'
miRNA:   3'- -CGGU--AUGCGa----ACC--CGCG-GUAGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 72715 0.69 0.797637
Target:  5'- cGCCGUuaauuGCGCUUGcGCGUCGgccagCGACGc -3'
miRNA:   3'- -CGGUA-----UGCGAACcCGCGGUa----GCUGCu -5'
6786 5' -55.3 NC_001875.2 + 86374 0.68 0.815496
Target:  5'- cGCUAgacGCGCggcugcGGGCGCCGagcgccgaguUCGACGc -3'
miRNA:   3'- -CGGUa--UGCGaa----CCCGCGGU----------AGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 125343 0.72 0.597727
Target:  5'- gGCCAgcguguugGCGCggcacuccgcgUUGGGCGCCGUaaucgaccUGACGAa -3'
miRNA:   3'- -CGGUa-------UGCG-----------AACCCGCGGUA--------GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 20023 0.72 0.626632
Target:  5'- aGCCGUcACGCggagcagccaGGCGCCGUCGGCc- -3'
miRNA:   3'- -CGGUA-UGCGaac-------CCGCGGUAGCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.