miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6787 3' -57.8 NC_001875.2 + 74622 1.08 0.002015
Target:  5'- uCGCGCCCGUGAUGGCGUGCUACGACAu -3'
miRNA:   3'- -GCGCGGGCACUACCGCACGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 43412 0.67 0.739997
Target:  5'- uGCGCUCGUuaacGccGGCGUaCUugGACAg -3'
miRNA:   3'- gCGCGGGCA----CuaCCGCAcGAugCUGU- -5'
6787 3' -57.8 NC_001875.2 + 58265 0.67 0.768618
Target:  5'- gGCGCUCGUGucacccggGGUGUcGUcGCGACGg -3'
miRNA:   3'- gCGCGGGCACua------CCGCA-CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 89782 0.66 0.822378
Target:  5'- aCGCGCUCGUGcacGUGcGCGaacgcaGCgcggGCGGCAg -3'
miRNA:   3'- -GCGCGGGCAC---UAC-CGCa-----CGa---UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 17661 0.71 0.539037
Target:  5'- gCGCGCUggcgGUGAagcUGGCGUuuagccgacgcgGCUGCGACAg -3'
miRNA:   3'- -GCGCGGg---CACU---ACCGCA------------CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 70021 0.7 0.558914
Target:  5'- aCGUGCgCCGUGuUGGCauugauugugcgGUcGCUGCGACGg -3'
miRNA:   3'- -GCGCG-GGCACuACCG------------CA-CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 39936 0.7 0.589089
Target:  5'- aGUGCCCGUuucaaauaaaGGUGuGCGUGa-GCGACAg -3'
miRNA:   3'- gCGCGGGCA----------CUAC-CGCACgaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 50013 0.7 0.589089
Target:  5'- uCGCGCCCGUGAauuUGGCcacgGUGUacucguUGgGGCAg -3'
miRNA:   3'- -GCGCGGGCACU---ACCG----CACG------AUgCUGU- -5'
6787 3' -57.8 NC_001875.2 + 123360 0.68 0.690554
Target:  5'- gGCGCCCGgcGUGGUGUuuccGC-GCGACGu -3'
miRNA:   3'- gCGCGGGCacUACCGCA----CGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 98926 0.68 0.720436
Target:  5'- gGCGCCgGU--UGcGCGUGC-GCGACGc -3'
miRNA:   3'- gCGCGGgCAcuAC-CGCACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 83808 0.68 0.710538
Target:  5'- uCGUGCCUGUGGgcGGCG-GCcACGugGc -3'
miRNA:   3'- -GCGCGGGCACUa-CCGCaCGaUGCugU- -5'
6787 3' -57.8 NC_001875.2 + 102984 0.7 0.599218
Target:  5'- uGUGCCCugcgggcacGUGGUGGCGUGC---GGCAa -3'
miRNA:   3'- gCGCGGG---------CACUACCGCACGaugCUGU- -5'
6787 3' -57.8 NC_001875.2 + 5814 0.74 0.36728
Target:  5'- gGCGCCacuuUGAUGGCGaggauaGCUGCGACGu -3'
miRNA:   3'- gCGCGGgc--ACUACCGCa-----CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 73606 0.68 0.710538
Target:  5'- aGCGCCaacUGuugcGGCGgcgGCUGCGGCGg -3'
miRNA:   3'- gCGCGGgc-ACua--CCGCa--CGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 28640 0.72 0.481048
Target:  5'- gCGUGCCCGUGucGUGGaaCGUGUggaACGGCGg -3'
miRNA:   3'- -GCGCGGGCAC--UACC--GCACGa--UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 14191 0.7 0.589089
Target:  5'- aGCGCCuaCGUGAcuuGUGUGUUGCGAUAa -3'
miRNA:   3'- gCGCGG--GCACUac-CGCACGAUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 23015 0.68 0.710538
Target:  5'- gCGCGCaCCGUGuucaGCGUGUUG-GACAg -3'
miRNA:   3'- -GCGCG-GGCACuac-CGCACGAUgCUGU- -5'
6787 3' -57.8 NC_001875.2 + 12674 0.67 0.768618
Target:  5'- gCGCGCCgCGU--UGGCcggGUGUgGCGGCAa -3'
miRNA:   3'- -GCGCGG-GCAcuACCG---CACGaUGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 128011 0.71 0.509698
Target:  5'- uGCGgCCGcGccGGCGUGCgccgACGACGg -3'
miRNA:   3'- gCGCgGGCaCuaCCGCACGa---UGCUGU- -5'
6787 3' -57.8 NC_001875.2 + 98494 0.7 0.578991
Target:  5'- cCGCGUgCGUGAuUGGC-UGCcggGCGACGa -3'
miRNA:   3'- -GCGCGgGCACU-ACCGcACGa--UGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.