miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 5' -58.7 NC_001875.2 + 20039 0.66 0.754563
Target:  5'- aGCCAGGC-GCcgUCGGCCgcgugcacCGCCGUcaccaGCGa -3'
miRNA:   3'- -CGGUUCGuCG--AGUCGGa-------GCGGCA-----CGU- -5'
6801 5' -58.7 NC_001875.2 + 49577 0.66 0.754563
Target:  5'- gGCCAAGCAGCU--GCg-CGCCGacgaGCGc -3'
miRNA:   3'- -CGGUUCGUCGAguCGgaGCGGCa---CGU- -5'
6801 5' -58.7 NC_001875.2 + 88068 0.66 0.754563
Target:  5'- cGCC-AGCAGCg-GGCCgcacaacugCGUCGUGUu -3'
miRNA:   3'- -CGGuUCGUCGagUCGGa--------GCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 39581 0.66 0.754563
Target:  5'- gGCCGcGCuGCUCAGCaCggucCGC-GUGCAc -3'
miRNA:   3'- -CGGUuCGuCGAGUCG-Ga---GCGgCACGU- -5'
6801 5' -58.7 NC_001875.2 + 89089 0.66 0.754563
Target:  5'- cCCGAGCGcgccGCUCAccaugcGCgUCGCCGcGCGc -3'
miRNA:   3'- cGGUUCGU----CGAGU------CGgAGCGGCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 63700 0.66 0.753599
Target:  5'- cGCaCGAGguGCgcgugauuGCCUCGCCGgaacuggacgcgcUGCAc -3'
miRNA:   3'- -CG-GUUCguCGagu-----CGGAGCGGC-------------ACGU- -5'
6801 5' -58.7 NC_001875.2 + 121162 0.66 0.744874
Target:  5'- aGCCGuuGCGGCagcGCCUgCGCCaaGUGCAg -3'
miRNA:   3'- -CGGUu-CGUCGaguCGGA-GCGG--CACGU- -5'
6801 5' -58.7 NC_001875.2 + 2900 0.66 0.744874
Target:  5'- cGCCuuAGCcGCUCGuGCCUauucacCGCCucGUGCAa -3'
miRNA:   3'- -CGGu-UCGuCGAGU-CGGA------GCGG--CACGU- -5'
6801 5' -58.7 NC_001875.2 + 130913 0.66 0.744874
Target:  5'- aGCCGuccggucacGGCAGUggcggCGGUUUgCGCCGUGUg -3'
miRNA:   3'- -CGGU---------UCGUCGa----GUCGGA-GCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 87352 0.66 0.744874
Target:  5'- -gCAA-CAGUUCGGCCUggucgCGCCgGUGCAc -3'
miRNA:   3'- cgGUUcGUCGAGUCGGA-----GCGG-CACGU- -5'
6801 5' -58.7 NC_001875.2 + 63017 0.66 0.739011
Target:  5'- cGCCAGGCAGCgcaaauaCAGCgugggauggugcaggUguUCGCCG-GCAg -3'
miRNA:   3'- -CGGUUCGUCGa------GUCG---------------G--AGCGGCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 78389 0.66 0.735085
Target:  5'- aGCCGAGCGacccgcaguGCUgCAcGCgCUgGCCGUGUg -3'
miRNA:   3'- -CGGUUCGU---------CGA-GU-CG-GAgCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 119676 0.66 0.735085
Target:  5'- gGCgCAcAGCGGCuUCAGCCgaaagCGCUGguUGCGc -3'
miRNA:   3'- -CG-GU-UCGUCG-AGUCGGa----GCGGC--ACGU- -5'
6801 5' -58.7 NC_001875.2 + 13802 0.66 0.735085
Target:  5'- -gCGGGUGGCgCGGCgUUGCCGUcGCAc -3'
miRNA:   3'- cgGUUCGUCGaGUCGgAGCGGCA-CGU- -5'
6801 5' -58.7 NC_001875.2 + 60131 0.66 0.735085
Target:  5'- uGCCGcAGCGGUccCAGUUgucCGUCGUGCAc -3'
miRNA:   3'- -CGGU-UCGUCGa-GUCGGa--GCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 127970 0.66 0.735085
Target:  5'- aGCUuGGCGGCgCGGUgcUGCCGUGCc -3'
miRNA:   3'- -CGGuUCGUCGaGUCGgaGCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 99897 0.66 0.73213
Target:  5'- cGCC-GGCAGcCUCgagcgcaacgagcgGGCCgcgcgCGCgGUGCAg -3'
miRNA:   3'- -CGGuUCGUC-GAG--------------UCGGa----GCGgCACGU- -5'
6801 5' -58.7 NC_001875.2 + 39274 0.66 0.729167
Target:  5'- cGCgGGGCGGCuUCuGCC-CGCCGacaccaagugcgcgcUGCAc -3'
miRNA:   3'- -CGgUUCGUCG-AGuCGGaGCGGC---------------ACGU- -5'
6801 5' -58.7 NC_001875.2 + 93144 0.66 0.725205
Target:  5'- uGCCGccGGUcaGGUUCAGCCccaCGCCGccGCAc -3'
miRNA:   3'- -CGGU--UCG--UCGAGUCGGa--GCGGCa-CGU- -5'
6801 5' -58.7 NC_001875.2 + 57796 0.66 0.725205
Target:  5'- cGCCGAGCAGCgCGGUUUUuaGCgCG-GCAa -3'
miRNA:   3'- -CGGUUCGUCGaGUCGGAG--CG-GCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.