miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6801 5' -58.7 NC_001875.2 + 65111 1.1 0.00098
Target:  5'- gGCCAAGCAGCUCAGCCUCGCCGUGCAg -3'
miRNA:   3'- -CGGUUCGUCGAGUCGGAGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 9627 0.68 0.63375
Target:  5'- uGCUAAGCuGCgu-GCgCgCGCCGUGCGu -3'
miRNA:   3'- -CGGUUCGuCGaguCG-GaGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 32558 0.67 0.64403
Target:  5'- cGCCGaggAGCGGCUgCAGCagUGCCGcGCGc -3'
miRNA:   3'- -CGGU---UCGUCGA-GUCGgaGCGGCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 89089 0.66 0.754563
Target:  5'- cCCGAGCGcgccGCUCAccaugcGCgUCGCCGcGCGc -3'
miRNA:   3'- cGGUUCGU----CGAGU------CGgAGCGGCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 2308 0.71 0.436908
Target:  5'- gGCCGcgcGCAGCUCGGCCagcUCGgCC-UGCAg -3'
miRNA:   3'- -CGGUu--CGUCGAGUCGG---AGC-GGcACGU- -5'
6801 5' -58.7 NC_001875.2 + 45979 0.71 0.455197
Target:  5'- cGCCGcuGCGGCgaa--CUCGCCGUGCAc -3'
miRNA:   3'- -CGGUu-CGUCGagucgGAGCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 115578 0.7 0.526158
Target:  5'- cGCCGGGCAccacgugacgcacgcGCgugaCGGCCUCGUCGccGCAg -3'
miRNA:   3'- -CGGUUCGU---------------CGa---GUCGGAGCGGCa-CGU- -5'
6801 5' -58.7 NC_001875.2 + 91751 0.69 0.552097
Target:  5'- aGCCAguGGCgcgucAGCgccgCGGCCUCGUCGUaguGCGg -3'
miRNA:   3'- -CGGU--UCG-----UCGa---GUCGGAGCGGCA---CGU- -5'
6801 5' -58.7 NC_001875.2 + 49791 0.68 0.582484
Target:  5'- gGCC-AGCAuuccGCUCAGCC-CGCCGcgaUGUc -3'
miRNA:   3'- -CGGuUCGU----CGAGUCGGaGCGGC---ACGu -5'
6801 5' -58.7 NC_001875.2 + 98678 0.68 0.623468
Target:  5'- uGCCucGAGCGGCagcGCgaCGCCGUGCu -3'
miRNA:   3'- -CGG--UUCGUCGaguCGgaGCGGCACGu -5'
6801 5' -58.7 NC_001875.2 + 76917 0.68 0.586564
Target:  5'- cGCCcagcgacgacgaGAGCGGCUcCAGCgaggacgaagacgCGCCGUGCGa -3'
miRNA:   3'- -CGG------------UUCGUCGA-GUCGga-----------GCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 122024 0.69 0.562179
Target:  5'- cGCCcguuuuuuauAGCAGC-C-GCCgauggCGCCGUGCAa -3'
miRNA:   3'- -CGGu---------UCGUCGaGuCGGa----GCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 33633 0.73 0.344462
Target:  5'- cGCCGGGCAGUUgCAGCCgcucaccucgaCGCCGUcgGCGg -3'
miRNA:   3'- -CGGUUCGUCGA-GUCGGa----------GCGGCA--CGU- -5'
6801 5' -58.7 NC_001875.2 + 80038 0.68 0.601907
Target:  5'- uGCUuuGCAGCU-GGUCUuugaugaCGCCGUGCGu -3'
miRNA:   3'- -CGGuuCGUCGAgUCGGA-------GCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 127402 0.73 0.351477
Target:  5'- gGCCAaagugcuGGCGGCgcgcgUCAGCaugcCGCCGUGCAu -3'
miRNA:   3'- -CGGU-------UCGUCG-----AGUCGga--GCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 108145 0.69 0.562179
Target:  5'- gGCCGuugAGUauauugGGCcgCAGCCUgGUCGUGCAc -3'
miRNA:   3'- -CGGU---UCG------UCGa-GUCGGAgCGGCACGU- -5'
6801 5' -58.7 NC_001875.2 + 89316 0.68 0.602932
Target:  5'- uGUCGAGCGGCacgacgggccUCAGCUUUGCgGcGCAc -3'
miRNA:   3'- -CGGUUCGUCG----------AGUCGGAGCGgCaCGU- -5'
6801 5' -58.7 NC_001875.2 + 18335 0.67 0.643002
Target:  5'- cGCCGacuuugcAGCAGCUCGGCauggaCGCCaacggcGUGCu -3'
miRNA:   3'- -CGGU-------UCGUCGAGUCGga---GCGG------CACGu -5'
6801 5' -58.7 NC_001875.2 + 122521 0.72 0.379707
Target:  5'- gGCCGGGCAGCUUcGCCgauugcguccggcgCGCaGUGCAc -3'
miRNA:   3'- -CGGUUCGUCGAGuCGGa-------------GCGgCACGU- -5'
6801 5' -58.7 NC_001875.2 + 37233 0.7 0.522207
Target:  5'- cGCCGcuGCAGCUCAGCgaacCGCCGUa-- -3'
miRNA:   3'- -CGGUu-CGUCGAGUCGga--GCGGCAcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.