miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 85296 0.66 0.683292
Target:  5'- --gCGCGgGCgGCGCG-GGCGcGGGCa -3'
miRNA:   3'- ugaGCGCgCGgUGCGUgUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 50140 0.66 0.683292
Target:  5'- cGCUCuuccaGCGCCugGCGCGccuucuGCAUGGccGCc -3'
miRNA:   3'- -UGAGcg---CGCGGugCGUGU------CGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 38661 0.66 0.697289
Target:  5'- uAC-CGCGUGCUGCucauguccaucaaguGCgGCGGCGUGGGg -3'
miRNA:   3'- -UGaGCGCGCGGUG---------------CG-UGUCGUACCCg -5'
6840 5' -59.8 NC_001875.2 + 45462 0.66 0.683292
Target:  5'- cGCUCgGCGCccgcaGCCGCGCGucUAGCGcGGuGCc -3'
miRNA:   3'- -UGAG-CGCG-----CGGUGCGU--GUCGUaCC-CG- -5'
6840 5' -59.8 NC_001875.2 + 25998 0.66 0.673243
Target:  5'- gACUCGUgguggccgucgGCGCCuggGCGguCAGCAUGcuguuGGCc -3'
miRNA:   3'- -UGAGCG-----------CGCGG---UGCguGUCGUAC-----CCG- -5'
6840 5' -59.8 NC_001875.2 + 23799 0.66 0.683292
Target:  5'- cGC-CGaCGUGUCGCucCGCGGCGUcGGGCg -3'
miRNA:   3'- -UGaGC-GCGCGGUGc-GUGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 18161 0.66 0.693299
Target:  5'- uGCggCGCGCGCgACGCcgccacugugGCGGUGccggcGGGCg -3'
miRNA:   3'- -UGa-GCGCGCGgUGCG----------UGUCGUa----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 110084 0.66 0.672236
Target:  5'- cGCUgCGCGUggaggccGCCACGCGCGGCcagaGCa -3'
miRNA:   3'- -UGA-GCGCG-------CGGUGCGUGUCGuaccCG- -5'
6840 5' -59.8 NC_001875.2 + 10639 0.66 0.683292
Target:  5'- --gUGC-CGCCcaGCGUGCAGUAcuUGGGCg -3'
miRNA:   3'- ugaGCGcGCGG--UGCGUGUCGU--ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 57669 0.66 0.722986
Target:  5'- aGCUCGCaaaacGCGuCCAaGCugGCGGCGgcGGGCg -3'
miRNA:   3'- -UGAGCG-----CGC-GGUgCG--UGUCGUa-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 90036 0.66 0.670222
Target:  5'- cGC-CGCGCGCCAUGuUGCAGCAcuacaacgagugccUGGa- -3'
miRNA:   3'- -UGaGCGCGCGGUGC-GUGUCGU--------------ACCcg -5'
6840 5' -59.8 NC_001875.2 + 74651 0.66 0.693299
Target:  5'- ---aGCGUGCCAUGgcCGgGGC-UGGGCg -3'
miRNA:   3'- ugagCGCGCGGUGC--GUgUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 17101 0.66 0.693299
Target:  5'- aGC-CGCGCGCCAcuggcggcCGCAUaagcaAGCAUuuGGCg -3'
miRNA:   3'- -UGaGCGCGCGGU--------GCGUG-----UCGUAc-CCG- -5'
6840 5' -59.8 NC_001875.2 + 100762 0.66 0.683292
Target:  5'- uUUUGCGCGgCGCuuGCACAGguUGagcGGCa -3'
miRNA:   3'- uGAGCGCGCgGUG--CGUGUCguAC---CCG- -5'
6840 5' -59.8 NC_001875.2 + 72555 0.66 0.693299
Target:  5'- --aCGgGCGCUGCGgGCgcgGGCGcGGGCg -3'
miRNA:   3'- ugaGCgCGCGGUGCgUG---UCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 30622 0.66 0.672236
Target:  5'- aACUgCGCGCaaccaaaGCCGuCGacaaACGGCAaguUGGGCg -3'
miRNA:   3'- -UGA-GCGCG-------CGGU-GCg---UGUCGU---ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 85465 0.66 0.673243
Target:  5'- -gUCGC-UGCaCAUGCGCAGCAgcUGcGGCc -3'
miRNA:   3'- ugAGCGcGCG-GUGCGUGUCGU--AC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 66054 0.66 0.700275
Target:  5'- cAC-CGCGCGCCgACGCcGCGcGCGUGcucgcccagccgccGGCu -3'
miRNA:   3'- -UGaGCGCGCGG-UGCG-UGU-CGUAC--------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 90499 0.66 0.693299
Target:  5'- aACUgCGCGCGgcCCACuuGCACGGCGUacGCg -3'
miRNA:   3'- -UGA-GCGCGC--GGUG--CGUGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 104208 0.66 0.690302
Target:  5'- --aUGCGCGaaccacggccuaaaCCACGCGguGCuguugGUGGGCu -3'
miRNA:   3'- ugaGCGCGC--------------GGUGCGUguCG-----UACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.