miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 225 0.69 0.494046
Target:  5'- -gUCGCGCGCCaucaaauuGCGCACGuuuuucagcGCGgcgGGGUc -3'
miRNA:   3'- ugAGCGCGCGG--------UGCGUGU---------CGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 634 0.69 0.531663
Target:  5'- ---aGCGCGCCcuGCGUuuGCAGCGUcucaaacagguccGGGCa -3'
miRNA:   3'- ugagCGCGCGG--UGCG--UGUCGUA-------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 1024 0.73 0.30344
Target:  5'- uGCagCGCGUggcgggGCCcgagGCGCACAGCGUuGGGCg -3'
miRNA:   3'- -UGa-GCGCG------CGG----UGCGUGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 2294 0.74 0.27027
Target:  5'- uGCgcgCGCGCcgugGCCGCGCGCAGCuc-GGCc -3'
miRNA:   3'- -UGa--GCGCG----CGGUGCGUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 2623 0.67 0.632802
Target:  5'- cGCUCGaaucCGUGCCaAUGUACAcgAUGGGCu -3'
miRNA:   3'- -UGAGC----GCGCGG-UGCGUGUcgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 2659 0.67 0.663162
Target:  5'- uACUUGCgGCGCCG---GCGGCGccugGGGCa -3'
miRNA:   3'- -UGAGCG-CGCGGUgcgUGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 2849 0.66 0.722986
Target:  5'- ---aGCGUGUUGCGCcaagaauuuguaGCAGCGguugGGGCg -3'
miRNA:   3'- ugagCGCGCGGUGCG------------UGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 3070 0.7 0.460437
Target:  5'- aGCg-GCGCGCCGgggucgcccacggcgUGCACGcGCcgGGGCg -3'
miRNA:   3'- -UGagCGCGCGGU---------------GCGUGU-CGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 3136 0.67 0.622671
Target:  5'- gGCgaaGCcCGCUGCGCggacGCGGCGUcGGGCg -3'
miRNA:   3'- -UGag-CGcGCGGUGCG----UGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 3775 0.67 0.663162
Target:  5'- uUUCGCGCGCaauguCGUcCAGU-UGGGCc -3'
miRNA:   3'- uGAGCGCGCGgu---GCGuGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 3861 0.68 0.589328
Target:  5'- gUUCGUGUGgCACG-GCAGCAccgcgccgccaagcUGGGCa -3'
miRNA:   3'- uGAGCGCGCgGUGCgUGUCGU--------------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 4435 0.66 0.713155
Target:  5'- uGCUgaCGCGCGCCGCcaGCACuuuGGCca-GGCu -3'
miRNA:   3'- -UGA--GCGCGCGGUG--CGUG---UCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 5775 0.68 0.562282
Target:  5'- gUUCaGCGCGuCCugGUACGGCAUuugccGGCu -3'
miRNA:   3'- uGAG-CGCGC-GGugCGUGUCGUAc----CCG- -5'
6840 5' -59.8 NC_001875.2 + 5882 0.67 0.622671
Target:  5'- cCUCGCcgauGCGCCGaaccauguaguCGUACAGCGccGGCa -3'
miRNA:   3'- uGAGCG----CGCGGU-----------GCGUGUCGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 6193 0.67 0.663162
Target:  5'- uGCcCGCGCGCCguuucaaaGCGCGCAauuGCGUccgucGGCg -3'
miRNA:   3'- -UGaGCGCGCGG--------UGCGUGU---CGUAc----CCG- -5'
6840 5' -59.8 NC_001875.2 + 6438 0.66 0.703256
Target:  5'- cAUUUGCGCGCCGuCGUAgUAGCGcGcGGUg -3'
miRNA:   3'- -UGAGCGCGCGGU-GCGU-GUCGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 6749 0.67 0.622671
Target:  5'- --aCGCGCagcaacgauguGCCGCGCauucGCGGCGUguuucaGGGCa -3'
miRNA:   3'- ugaGCGCG-----------CGGUGCG----UGUCGUA------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 6952 0.66 0.72592
Target:  5'- --gCGUGCGCCGCGacaucgcCACGGCGcgcugcuugacagcGGGCa -3'
miRNA:   3'- ugaGCGCGCGGUGC-------GUGUCGUa-------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 8478 0.67 0.612547
Target:  5'- -gUCGCGCggaaacaccacGCCGgGCGCcguccGUGUGGGCg -3'
miRNA:   3'- ugAGCGCG-----------CGGUgCGUGu----CGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 9136 0.69 0.503581
Target:  5'- gACUCGCGCGCCA-GUuCGGUGUccacGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUgCGuGUCGUAc---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.