miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 42737 0.71 0.412412
Target:  5'- -gUCGCGCGCgGCGaCGC-GCAUGGugaGCg -3'
miRNA:   3'- ugAGCGCGCGgUGC-GUGuCGUACC---CG- -5'
6840 5' -59.8 NC_001875.2 + 80638 0.72 0.378898
Target:  5'- cGCUCGacgggcgGCGCCAgaacCGCGCcGuCGUGGGCa -3'
miRNA:   3'- -UGAGCg------CGCGGU----GCGUGuC-GUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 100696 0.71 0.387104
Target:  5'- gACUcCGCGCGCgGCGCGuuaAGCAUGcacauugcugcGGCg -3'
miRNA:   3'- -UGA-GCGCGCGgUGCGUg--UCGUAC-----------CCG- -5'
6840 5' -59.8 NC_001875.2 + 48739 0.71 0.390419
Target:  5'- --gCGCGgGCCA-GCACAGUagcacguacgacgugGUGGGCa -3'
miRNA:   3'- ugaGCGCgCGGUgCGUGUCG---------------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 113398 0.71 0.390419
Target:  5'- gAUUCGCGCGCCACGCggaccGCGccucgcgccgaguacGCAaUGGGa -3'
miRNA:   3'- -UGAGCGCGCGGUGCG-----UGU---------------CGU-ACCCg -5'
6840 5' -59.8 NC_001875.2 + 53885 0.71 0.395426
Target:  5'- -gUCGUGCgGCCGC-CGCGGCgcaaauaauuGUGGGCg -3'
miRNA:   3'- ugAGCGCG-CGGUGcGUGUCG----------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 74315 0.71 0.412412
Target:  5'- ---gGCGCGCagGCGCcggACAGCAcGGGCg -3'
miRNA:   3'- ugagCGCGCGg-UGCG---UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 128689 0.71 0.412412
Target:  5'- uACUCGCcgcccgacgccGCGUC-CGCGCAGC--GGGCu -3'
miRNA:   3'- -UGAGCG-----------CGCGGuGCGUGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 30426 0.71 0.412412
Target:  5'- aACUCGUGCaGCaaagcguccaACGCGCAGC-UGGcGCg -3'
miRNA:   3'- -UGAGCGCG-CGg---------UGCGUGUCGuACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 43027 0.72 0.378898
Target:  5'- uGC-CGCGCGCCGCgGCGC-GC--GGGCu -3'
miRNA:   3'- -UGaGCGCGCGGUG-CGUGuCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 42588 0.72 0.37081
Target:  5'- cACgCGCGCGUCA-GCuCGGCGcUGGGCa -3'
miRNA:   3'- -UGaGCGCGCGGUgCGuGUCGU-ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 21558 0.72 0.354991
Target:  5'- uAC-CGCGgGCCGCGCGauauUAGCGUGGacGCg -3'
miRNA:   3'- -UGaGCGCgCGGUGCGU----GUCGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 45705 0.76 0.212762
Target:  5'- cGCcgCGCGCGCCGCGCACuGCcgauGGCc -3'
miRNA:   3'- -UGa-GCGCGCGGUGCGUGuCGuac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 51922 0.75 0.240083
Target:  5'- --aUGC-CGCCGCuGCACAGCGUGcGGCg -3'
miRNA:   3'- ugaGCGcGCGGUG-CGUGUCGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 116894 0.74 0.257234
Target:  5'- aACUCuucgucuGCGCuaGCCGCGCGCGGCggGuGGCg -3'
miRNA:   3'- -UGAG-------CGCG--CGGUGCGUGUCGuaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 85700 0.74 0.263997
Target:  5'- aGCUUGCGCGCCGCgaucgacugguuGCcCAGCGUGGuCa -3'
miRNA:   3'- -UGAGCGCGCGGUG------------CGuGUCGUACCcG- -5'
6840 5' -59.8 NC_001875.2 + 113562 0.74 0.27027
Target:  5'- aACggCGCG-GUCGCGCACGGCGcgccauUGGGCc -3'
miRNA:   3'- -UGa-GCGCgCGGUGCGUGUCGU------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 1024 0.73 0.30344
Target:  5'- uGCagCGCGUggcgggGCCcgagGCGCACAGCGUuGGGCg -3'
miRNA:   3'- -UGa-GCGCG------CGG----UGCGUGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 32092 0.73 0.310438
Target:  5'- gGCUUGCGCGUCACaGCACgAGCAcgacaaGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUG-CGUG-UCGUac----CCG- -5'
6840 5' -59.8 NC_001875.2 + 110830 0.72 0.339653
Target:  5'- cGCUgGUGCGCCGCGgACuGUAUuugucguacGGGCa -3'
miRNA:   3'- -UGAgCGCGCGGUGCgUGuCGUA---------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.