miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 35813 1.11 0.000716
Target:  5'- aACUCGCGCGCCACGCACAGCAUGGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUGCGUGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 32769 0.83 0.070577
Target:  5'- cCUCgaGCGCGuCCuCGCGCGGCGUGGGCg -3'
miRNA:   3'- uGAG--CGCGC-GGuGCGUGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 23997 0.78 0.153993
Target:  5'- aACUCGCGCGCguCGCAaGGCGcaccGGGCg -3'
miRNA:   3'- -UGAGCGCGCGguGCGUgUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 12672 0.77 0.166092
Target:  5'- --aCGCGCGCCGCGUuggccgggugugGCGGCAaaauguuaUGGGCg -3'
miRNA:   3'- ugaGCGCGCGGUGCG------------UGUCGU--------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 89268 0.77 0.174625
Target:  5'- cGCgcgCGUGCGCCGaccugGCGCGGC-UGGGCg -3'
miRNA:   3'- -UGa--GCGCGCGGUg----CGUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 45705 0.76 0.212762
Target:  5'- cGCcgCGCGCGCCGCGCACuGCcgauGGCc -3'
miRNA:   3'- -UGa-GCGCGCGGUGCGUGuCGuac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 89995 0.75 0.223355
Target:  5'- aGCUCGC-CGCCGCgGCGCGGCAacUGGacGCg -3'
miRNA:   3'- -UGAGCGcGCGGUG-CGUGUCGU--ACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 95217 0.75 0.223355
Target:  5'- aGCUCGUGUGCCGCGaucgguGguGCAaGGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUGCg-----UguCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 51922 0.75 0.240083
Target:  5'- --aUGC-CGCCGCuGCACAGCGUGcGGCg -3'
miRNA:   3'- ugaGCGcGCGGUG-CGUGUCGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 20014 0.75 0.240083
Target:  5'- gGCUCGCGCagccGUCACGCGgAGCAgccaGGCg -3'
miRNA:   3'- -UGAGCGCG----CGGUGCGUgUCGUac--CCG- -5'
6840 5' -59.8 NC_001875.2 + 96448 0.75 0.251806
Target:  5'- cGCUcgCGCGCGCCACGgACAGCAgc-GCc -3'
miRNA:   3'- -UGA--GCGCGCGGUGCgUGUCGUaccCG- -5'
6840 5' -59.8 NC_001875.2 + 90044 0.75 0.251806
Target:  5'- gGCgCGCGUGCCgGCGgaaauCACaAGCAUGGGCg -3'
miRNA:   3'- -UGaGCGCGCGG-UGC-----GUG-UCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 116894 0.74 0.257234
Target:  5'- aACUCuucgucuGCGCuaGCCGCGCGCGGCggGuGGCg -3'
miRNA:   3'- -UGAG-------CGCG--CGGUGCGUGUCGuaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 73025 0.74 0.257843
Target:  5'- --aCGCGCGCauuucCGCGUGCAGC-UGGGCc -3'
miRNA:   3'- ugaGCGCGCG-----GUGCGUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 85700 0.74 0.263997
Target:  5'- aGCUUGCGCGCCGCgaucgacugguuGCcCAGCGUGGuCa -3'
miRNA:   3'- -UGAGCGCGCGGUG------------CGuGUCGUACCcG- -5'
6840 5' -59.8 NC_001875.2 + 113562 0.74 0.27027
Target:  5'- aACggCGCG-GUCGCGCACGGCGcgccauUGGGCc -3'
miRNA:   3'- -UGa-GCGCgCGGUGCGUGUCGU------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 2294 0.74 0.27027
Target:  5'- uGCgcgCGCGCcgugGCCGCGCGCAGCuc-GGCc -3'
miRNA:   3'- -UGa--GCGCG----CGGUGCGUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 66890 0.74 0.279253
Target:  5'- aAUUCGCgGCGCCAucguguuuugcauaaUGCugGGCAcGGGCa -3'
miRNA:   3'- -UGAGCG-CGCGGU---------------GCGugUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 111200 0.74 0.283175
Target:  5'- gGCggCGCGCGCCguuuuuuguuGCuCACgGGCGUGGGCa -3'
miRNA:   3'- -UGa-GCGCGCGG----------UGcGUG-UCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 1024 0.73 0.30344
Target:  5'- uGCagCGCGUggcgggGCCcgagGCGCACAGCGUuGGGCg -3'
miRNA:   3'- -UGa-GCGCG------CGG----UGCGUGUCGUA-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.