miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 3' -58.3 NC_001875.2 + 33345 0.66 0.71941
Target:  5'- uCGCccGGCAGCcaaucacGCACgcGGCAGuCGCAAAa -3'
miRNA:   3'- -GCGu-CCGUCGa------CGUG--UCGUC-GCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 19007 0.66 0.689568
Target:  5'- gCGCAGGCcGCaacgcgcuuugcacgUGCGCGGCGuuuuuaagugcgguGUGCAAAa -3'
miRNA:   3'- -GCGUCCGuCG---------------ACGUGUCGU--------------CGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 99391 0.66 0.688531
Target:  5'- cCGCAccGGCGGCgccagcgGguCGcGCAGCGCAu- -3'
miRNA:   3'- -GCGU--CCGUCGa------CguGU-CGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 102354 0.66 0.677083
Target:  5'- uCGUuuGCAGCUGCAguucgucCAGCAuggcGCGCAAc -3'
miRNA:   3'- -GCGucCGUCGACGU-------GUCGU----CGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 111927 0.66 0.687492
Target:  5'- gGcCGGuGCAGCUGCcguacgaGCAGCuaaaAGCGCAc- -3'
miRNA:   3'- gC-GUC-CGUCGACG-------UGUCG----UCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 66657 0.66 0.697853
Target:  5'- uGUuGGcCAGCUGCuggucgaACGGCAGCGgGAu -3'
miRNA:   3'- gCGuCC-GUCGACG-------UGUCGUCGCgUUu -5'
6842 3' -58.3 NC_001875.2 + 23227 0.66 0.674996
Target:  5'- aGCAGuaaacgugguuaGCAGCUGguCggagaacagcgacgGGCAGCGCAGc -3'
miRNA:   3'- gCGUC------------CGUCGACguG--------------UCGUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 66991 0.66 0.682293
Target:  5'- --aGGGCaAGCUGCGCAGCgacacaaucgggcucAaGCGCAAGc -3'
miRNA:   3'- gcgUCCG-UCGACGUGUCG---------------U-CGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 100704 0.66 0.709183
Target:  5'- gCGCGGcGCguuaAGCaUGCACAuugcuGCGGCGCGc- -3'
miRNA:   3'- -GCGUC-CG----UCG-ACGUGU-----CGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 126865 0.66 0.692679
Target:  5'- aGCgAGGCGGCuuUGCAguUaaugguggagaccgaGGCGGCGCAAAg -3'
miRNA:   3'- gCG-UCCGUCG--ACGU--G---------------UCGUCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 11906 0.66 0.688531
Target:  5'- gCGCGaacGGCGGCgagcagguguuuUGCGC-GCGGCGCGc- -3'
miRNA:   3'- -GCGU---CCGUCG------------ACGUGuCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 78985 0.66 0.682293
Target:  5'- gCGCAGGUagaagcgcgucaaccAGCUGgACAGCGuguccgagucGCGCGc- -3'
miRNA:   3'- -GCGUCCG---------------UCGACgUGUCGU----------CGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 124484 0.66 0.688531
Target:  5'- gGCGGGCA-CUGCACcGCAG-GCu-- -3'
miRNA:   3'- gCGUCCGUcGACGUGuCGUCgCGuuu -5'
6842 3' -58.3 NC_001875.2 + 16083 0.66 0.729559
Target:  5'- uCGC-GGCGGUuugaaaUGCGCuGCAacGCGCGAGa -3'
miRNA:   3'- -GCGuCCGUCG------ACGUGuCGU--CGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 100988 0.66 0.729559
Target:  5'- uGCAGGCcGCgGCguuuGCGGCGguuuuGCGCAAc -3'
miRNA:   3'- gCGUCCGuCGaCG----UGUCGU-----CGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 127906 0.66 0.703013
Target:  5'- aCGCu-GCAGCUGCAguuucucgcaaagcuCAGC-GCGCAGc -3'
miRNA:   3'- -GCGucCGUCGACGU---------------GUCGuCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 118188 0.66 0.678125
Target:  5'- aGUGGGCuguuuguGUUGaGCGGCGGCGCGGc -3'
miRNA:   3'- gCGUCCGu------CGACgUGUCGUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 86179 0.66 0.688531
Target:  5'- gCGCAGGUuuugcaaguaauGGCUGgGCAuGCucucgauguauuGGCGCAGAa -3'
miRNA:   3'- -GCGUCCG------------UCGACgUGU-CG------------UCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 42738 0.66 0.729559
Target:  5'- uCGCGcGCGGCgacGCGCauggugAGCGGCGCGc- -3'
miRNA:   3'- -GCGUcCGUCGa--CGUG------UCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 18661 0.66 0.695785
Target:  5'- uCGCAGcgcgucacgguGCGGCUGCugGGCgaaacguacaaggcGGCGCu-- -3'
miRNA:   3'- -GCGUC-----------CGUCGACGugUCG--------------UCGCGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.