miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 3' -58.3 NC_001875.2 + 34037 1.05 0.001726
Target:  5'- uCGCAGGCAGCUGCACAGCAGCGCAAAc -3'
miRNA:   3'- -GCGUCCGUCGACGUGUCGUCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 108749 0.83 0.068447
Target:  5'- gGCgGGGCAGCUGCAC-GCGGCGCGGGu -3'
miRNA:   3'- gCG-UCCGUCGACGUGuCGUCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 124242 0.78 0.162157
Target:  5'- uGCGGGCGGCgGCACaaugacgacaGGCGGCGCGu- -3'
miRNA:   3'- gCGUCCGUCGaCGUG----------UCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 101982 0.77 0.189428
Target:  5'- aCGCAGGCguugugcauugcGGCgUGCGCGGCGGCGguGGa -3'
miRNA:   3'- -GCGUCCG------------UCG-ACGUGUCGUCGCguUU- -5'
6842 3' -58.3 NC_001875.2 + 131517 0.77 0.189428
Target:  5'- gCGCGGuGCAGCgGCuggaAGCGGCGCAAAg -3'
miRNA:   3'- -GCGUC-CGUCGaCGug--UCGUCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 92495 0.76 0.204523
Target:  5'- gGCGGGCgucagcgucaGGCUGCGCcuGCAGCGCGc- -3'
miRNA:   3'- gCGUCCG----------UCGACGUGu-CGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 73792 0.76 0.209781
Target:  5'- gGCGgcGGCGGCUGgaACGGCAGCGCGc- -3'
miRNA:   3'- gCGU--CCGUCGACg-UGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 88125 0.76 0.215156
Target:  5'- uGCGGGCAcGgUGCugAGCGGCGCcAAAa -3'
miRNA:   3'- gCGUCCGU-CgACGugUCGUCGCG-UUU- -5'
6842 3' -58.3 NC_001875.2 + 84350 0.75 0.220649
Target:  5'- gGCGGaGCGGCUGCGCcgguAGguGCGCGGc -3'
miRNA:   3'- gCGUC-CGUCGACGUG----UCguCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 3040 0.75 0.226261
Target:  5'- aCGCcguuGGGCAGCgcguaagaggcGCGCAGCGGCGCGc- -3'
miRNA:   3'- -GCG----UCCGUCGa----------CGUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 763 0.75 0.226261
Target:  5'- uGCacaugGGGCAGCUG-ACGGCGGCGCGc- -3'
miRNA:   3'- gCG-----UCCGUCGACgUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 10442 0.75 0.249926
Target:  5'- gCGCA-GCAGCUuugacgcgGCGCGGCGGCGCGc- -3'
miRNA:   3'- -GCGUcCGUCGA--------CGUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 73693 0.74 0.275596
Target:  5'- uGC-GGCGGCUGCuGCGGCGGCuGCGGc -3'
miRNA:   3'- gCGuCCGUCGACG-UGUCGUCG-CGUUu -5'
6842 3' -58.3 NC_001875.2 + 73639 0.74 0.275596
Target:  5'- uGC-GGCGGCUGCuGCGGCGGCuGCGGc -3'
miRNA:   3'- gCGuCCGUCGACG-UGUCGUCG-CGUUu -5'
6842 3' -58.3 NC_001875.2 + 33385 0.74 0.275596
Target:  5'- aGCGGGUacAGCauUGCGCGGUAGCGCu-- -3'
miRNA:   3'- gCGUCCG--UCG--ACGUGUCGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 114494 0.74 0.275596
Target:  5'- gGCAGcacucugacGCGGUcGCGCGGCGGCGCAAc -3'
miRNA:   3'- gCGUC---------CGUCGaCGUGUCGUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 99920 0.73 0.296203
Target:  5'- aGCGGGCcGCgcgcGCGguGCAGCGCGGc -3'
miRNA:   3'- gCGUCCGuCGa---CGUguCGUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 17329 0.73 0.296203
Target:  5'- uGCuGGCGGUUGCGCcGCcGCGCGAc -3'
miRNA:   3'- gCGuCCGUCGACGUGuCGuCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 37599 0.73 0.303333
Target:  5'- cCGCGGcCGGCcGCACGGCGGCGUg-- -3'
miRNA:   3'- -GCGUCcGUCGaCGUGUCGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 91430 0.72 0.35692
Target:  5'- cCGCAGcucgcuGUAGCUGaGCGGCGGCGCGu- -3'
miRNA:   3'- -GCGUC------CGUCGACgUGUCGUCGCGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.