miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 3' -58.3 NC_001875.2 + 129526 0.7 0.482456
Target:  5'- uGCAGGCcgagcuggccgAGCUGCgcGCGGCcacGGCGCGc- -3'
miRNA:   3'- gCGUCCG-----------UCGACG--UGUCG---UCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 39668 0.71 0.416814
Target:  5'- gGCcGGCGGC-GCGCGGCGGCGa--- -3'
miRNA:   3'- gCGuCCGUCGaCGUGUCGUCGCguuu -5'
6842 3' -58.3 NC_001875.2 + 105608 0.71 0.416814
Target:  5'- cCGCAGcgccaagaGCGGUUGCACGuguGguGCGCAAAg -3'
miRNA:   3'- -GCGUC--------CGUCGACGUGU---CguCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 10568 0.71 0.42495
Target:  5'- -uCAGGCAGCUGCGCGacaacguGCAGCuGCu-- -3'
miRNA:   3'- gcGUCCGUCGACGUGU-------CGUCG-CGuuu -5'
6842 3' -58.3 NC_001875.2 + 85210 0.71 0.425859
Target:  5'- cCGaCGGGCcGCcGCGCGGUAGCGCc-- -3'
miRNA:   3'- -GC-GUCCGuCGaCGUGUCGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 40195 0.7 0.453679
Target:  5'- aCGCGuacGGCcagcuGCUGCGCGGCuauucGGCGCAGc -3'
miRNA:   3'- -GCGU---CCGu----CGACGUGUCG-----UCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 13022 0.7 0.472763
Target:  5'- uCGCGcGGCAGCuuUGCAaaaAGC-GCGCAAAu -3'
miRNA:   3'- -GCGU-CCGUCG--ACGUg--UCGuCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 11863 0.7 0.482456
Target:  5'- aGCGGGUccgaacAGuUUGUGCGGCAGCGCGu- -3'
miRNA:   3'- gCGUCCG------UC-GACGUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 41716 0.7 0.482456
Target:  5'- uGCGcGGC-GCUGCGCGGCGuCGCAu- -3'
miRNA:   3'- gCGU-CCGuCGACGUGUCGUcGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 62470 0.71 0.416814
Target:  5'- uCGguGGaCGGC-GCGCAGCGgGCGCAc- -3'
miRNA:   3'- -GCguCC-GUCGaCGUGUCGU-CGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 36576 0.71 0.407887
Target:  5'- aCGCGcGGCuGUUGCAaaauGCGGCGCAGc -3'
miRNA:   3'- -GCGU-CCGuCGACGUgu--CGUCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 104975 0.71 0.399081
Target:  5'- gGCGGGCuGgUGCACGGCAucaGCAAAa -3'
miRNA:   3'- gCGUCCGuCgACGUGUCGUcg-CGUUU- -5'
6842 3' -58.3 NC_001875.2 + 131517 0.77 0.189428
Target:  5'- gCGCGGuGCAGCgGCuggaAGCGGCGCAAAg -3'
miRNA:   3'- -GCGUC-CGUCGaCGug--UCGUCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 84350 0.75 0.220649
Target:  5'- gGCGGaGCGGCUGCGCcgguAGguGCGCGGc -3'
miRNA:   3'- gCGUC-CGUCGACGUG----UCguCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 10442 0.75 0.249926
Target:  5'- gCGCA-GCAGCUuugacgcgGCGCGGCGGCGCGc- -3'
miRNA:   3'- -GCGUcCGUCGA--------CGUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 17329 0.73 0.296203
Target:  5'- uGCuGGCGGUUGCGCcGCcGCGCGAc -3'
miRNA:   3'- gCGuCCGUCGACGUGuCGuCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 37599 0.73 0.303333
Target:  5'- cCGCGGcCGGCcGCACGGCGGCGUg-- -3'
miRNA:   3'- -GCGUCcGUCGaCGUGUCGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 91430 0.72 0.35692
Target:  5'- cCGCAGcucgcuGUAGCUGaGCGGCGGCGCGu- -3'
miRNA:   3'- -GCGUC------CGUCGACgUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 99304 0.72 0.365098
Target:  5'- gGCGGcGUuguauacgGGCUGCGCAGCAacguuGCGCGAAg -3'
miRNA:   3'- gCGUC-CG--------UCGACGUGUCGU-----CGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 47907 0.72 0.365098
Target:  5'- gCGCGGuGguGCUGcCGCAGCAcGCGUAc- -3'
miRNA:   3'- -GCGUC-CguCGAC-GUGUCGU-CGCGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.