miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6842 3' -58.3 NC_001875.2 + 763 0.75 0.226261
Target:  5'- uGCacaugGGGCAGCUG-ACGGCGGCGCGc- -3'
miRNA:   3'- gCG-----UCCGUCGACgUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 1034 0.67 0.6362
Target:  5'- gGCGGGgcccgaGGC-GCACAGCguugGGCGCAAc -3'
miRNA:   3'- gCGUCCg-----UCGaCGUGUCG----UCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 2667 0.66 0.71941
Target:  5'- gCGCcGGCGGCgccugggGCAacuGCGGCGCc-- -3'
miRNA:   3'- -GCGuCCGUCGa------CGUgu-CGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 2947 0.67 0.646709
Target:  5'- gCGCuGGCGcGCuUGCuCGGCAGCGguGu -3'
miRNA:   3'- -GCGuCCGU-CG-ACGuGUCGUCGCguUu -5'
6842 3' -58.3 NC_001875.2 + 3040 0.75 0.226261
Target:  5'- aCGCcguuGGGCAGCgcguaagaggcGCGCAGCGGCGCGc- -3'
miRNA:   3'- -GCG----UCCGUCGa----------CGUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 3456 0.69 0.512086
Target:  5'- aCGCAGGaCAGCUGCAac-CGGUGCc-- -3'
miRNA:   3'- -GCGUCC-GUCGACGUgucGUCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 3856 0.67 0.6362
Target:  5'- aGCAGGUucGUgugGCACGGCAGCaccGCGc- -3'
miRNA:   3'- gCGUCCGu-CGa--CGUGUCGUCG---CGUuu -5'
6842 3' -58.3 NC_001875.2 + 6999 0.69 0.512086
Target:  5'- uGUGGGUGuGCUGCuggcCGGCGGCGCGu- -3'
miRNA:   3'- gCGUCCGU-CGACGu---GUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 8991 0.69 0.532251
Target:  5'- gGguGGCAGCgaaaCACGucGCGGCGCAc- -3'
miRNA:   3'- gCguCCGUCGac--GUGU--CGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 10442 0.75 0.249926
Target:  5'- gCGCA-GCAGCUuugacgcgGCGCGGCGGCGCGc- -3'
miRNA:   3'- -GCGUcCGUCGA--------CGUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 10568 0.71 0.42495
Target:  5'- -uCAGGCAGCUGCGCGacaacguGCAGCuGCu-- -3'
miRNA:   3'- gcGUCCGUCGACGUGU-------CGUCG-CGuuu -5'
6842 3' -58.3 NC_001875.2 + 11161 0.71 0.407887
Target:  5'- gGCcGGUcgauGGC-GCACAGCAGCGCGc- -3'
miRNA:   3'- gCGuCCG----UCGaCGUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 11863 0.7 0.482456
Target:  5'- aGCGGGUccgaacAGuUUGUGCGGCAGCGCGu- -3'
miRNA:   3'- gCGUCCG------UC-GACGUGUCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 11906 0.66 0.688531
Target:  5'- gCGCGaacGGCGGCgagcagguguuuUGCGC-GCGGCGCGc- -3'
miRNA:   3'- -GCGU---CCGUCG------------ACGUGuCGUCGCGUuu -5'
6842 3' -58.3 NC_001875.2 + 13022 0.7 0.472763
Target:  5'- uCGCGcGGCAGCuuUGCAaaaAGC-GCGCAAAu -3'
miRNA:   3'- -GCGU-CCGUCG--ACGUg--UCGuCGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 16083 0.66 0.729559
Target:  5'- uCGC-GGCGGUuugaaaUGCGCuGCAacGCGCGAGa -3'
miRNA:   3'- -GCGuCCGUCG------ACGUGuCGU--CGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 17329 0.73 0.296203
Target:  5'- uGCuGGCGGUUGCGCcGCcGCGCGAc -3'
miRNA:   3'- gCGuCCGUCGACGUGuCGuCGCGUUu -5'
6842 3' -58.3 NC_001875.2 + 18661 0.66 0.695785
Target:  5'- uCGCAGcgcgucacgguGCGGCUGCugGGCgaaacguacaaggcGGCGCu-- -3'
miRNA:   3'- -GCGUC-----------CGUCGACGugUCG--------------UCGCGuuu -5'
6842 3' -58.3 NC_001875.2 + 19007 0.66 0.689568
Target:  5'- gCGCAGGCcGCaacgcgcuuugcacgUGCGCGGCGuuuuuaagugcgguGUGCAAAa -3'
miRNA:   3'- -GCGUCCGuCG---------------ACGUGUCGU--------------CGCGUUU- -5'
6842 3' -58.3 NC_001875.2 + 19917 0.71 0.396463
Target:  5'- uCGUAcGGCAGCUGCACcggcccguacacggAGCggccGGCGCGAc -3'
miRNA:   3'- -GCGU-CCGUCGACGUG--------------UCG----UCGCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.