miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6844 3' -55 NC_001875.2 + 124721 0.65 0.901883
Target:  5'- -gGCAAGCgGCGCGUggcGGUCaaugucgGCAGcGCg -3'
miRNA:   3'- uaCGUUCG-UGCGCAa--CCGG-------UGUCaCG- -5'
6844 3' -55 NC_001875.2 + 75073 0.65 0.902538
Target:  5'- cGUGCAagGGCAgGCuaaaauaGCUGCAGUGCa -3'
miRNA:   3'- -UACGU--UCGUgCGcaac---CGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 64947 0.65 0.902538
Target:  5'- uAUGCAaaacacgauGGCGcCGCGaauuaGGCCGCGGUcguGCa -3'
miRNA:   3'- -UACGU---------UCGU-GCGCaa---CCGGUGUCA---CG- -5'
6844 3' -55 NC_001875.2 + 66048 0.65 0.902538
Target:  5'- -cGCAGGCAcCGCGcgccgacGCCGCGcgcGUGCu -3'
miRNA:   3'- uaCGUUCGU-GCGCaac----CGGUGU---CACG- -5'
6844 3' -55 NC_001875.2 + 69444 0.65 0.902538
Target:  5'- -cGCcGGCguuuGCGCGccGGCCACGcuaaacaacGUGCg -3'
miRNA:   3'- uaCGuUCG----UGCGCaaCCGGUGU---------CACG- -5'
6844 3' -55 NC_001875.2 + 94476 0.65 0.901883
Target:  5'- -aGCGGcGCGCGCGUUcgcacgagcgcgcGGCCGCGc-GCa -3'
miRNA:   3'- uaCGUU-CGUGCGCAA-------------CCGGUGUcaCG- -5'
6844 3' -55 NC_001875.2 + 38455 0.66 0.88182
Target:  5'- aGUGCcGGCGCGCGcuagaaUUGGUgcaGCGcGUGCu -3'
miRNA:   3'- -UACGuUCGUGCGC------AACCGg--UGU-CACG- -5'
6844 3' -55 NC_001875.2 + 43020 0.66 0.874433
Target:  5'- uUGCGAGUGcCGCGc--GCCGCGGcGCg -3'
miRNA:   3'- uACGUUCGU-GCGCaacCGGUGUCaCG- -5'
6844 3' -55 NC_001875.2 + 58793 0.66 0.866813
Target:  5'- -cGCAaaacAGCGCcgaGUUGGCC-CAGcUGCa -3'
miRNA:   3'- uaCGU----UCGUGcg-CAACCGGuGUC-ACG- -5'
6844 3' -55 NC_001875.2 + 21505 0.66 0.88182
Target:  5'- uGUGCuacacGCACGCccaUUGGCUGUGGUGCg -3'
miRNA:   3'- -UACGuu---CGUGCGc--AACCGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 7140 0.66 0.88897
Target:  5'- uUGCcAG-GCGCGUUGGCCGaAGgGCc -3'
miRNA:   3'- uACGuUCgUGCGCAACCGGUgUCaCG- -5'
6844 3' -55 NC_001875.2 + 13546 0.66 0.874433
Target:  5'- uUGCAAGCGCGCcagcugcaGCCACucuUGCg -3'
miRNA:   3'- uACGUUCGUGCGcaac----CGGUGuc-ACG- -5'
6844 3' -55 NC_001875.2 + 10153 0.66 0.88897
Target:  5'- -cGCAAGCGCgGCGUggUGGCCgACGa--- -3'
miRNA:   3'- uaCGUUCGUG-CGCA--ACCGG-UGUcacg -5'
6844 3' -55 NC_001875.2 + 104704 0.66 0.881092
Target:  5'- -cGCuaAGGCugGUGgugUGGCCGCcaaacuuGGUGUu -3'
miRNA:   3'- uaCG--UUCGugCGCa--ACCGGUG-------UCACG- -5'
6844 3' -55 NC_001875.2 + 128902 0.66 0.866813
Target:  5'- -aGCAAGCGCGCca--GCgCGCGGUGa -3'
miRNA:   3'- uaCGUUCGUGCGcaacCG-GUGUCACg -5'
6844 3' -55 NC_001875.2 + 65751 0.66 0.872171
Target:  5'- -cGCGGGCcucggcguauucguGCGCGgcgGGCgGCGGcGCg -3'
miRNA:   3'- uaCGUUCG--------------UGCGCaa-CCGgUGUCaCG- -5'
6844 3' -55 NC_001875.2 + 50009 0.66 0.866813
Target:  5'- -cGCGguuggGGCGCGCG-UGGUCGcCGGgcgGCg -3'
miRNA:   3'- uaCGU-----UCGUGCGCaACCGGU-GUCa--CG- -5'
6844 3' -55 NC_001875.2 + 18048 0.66 0.874433
Target:  5'- aAUGCGAcauGCGCGUGgcggacaaccGGCCAagccaGGUGCu -3'
miRNA:   3'- -UACGUU---CGUGCGCaa--------CCGGUg----UCACG- -5'
6844 3' -55 NC_001875.2 + 90516 0.66 0.88897
Target:  5'- uUGCAcggcGUACGCGUUGGUCAaaacgGCc -3'
miRNA:   3'- uACGUu---CGUGCGCAACCGGUguca-CG- -5'
6844 3' -55 NC_001875.2 + 7575 0.66 0.88897
Target:  5'- -aGC-GGCACcccuguuuugGCGUgaucaaggauuuUGGCCGgCAGUGCa -3'
miRNA:   3'- uaCGuUCGUG----------CGCA------------ACCGGU-GUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.