miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6844 3' -55 NC_001875.2 + 33539 1.11 0.001838
Target:  5'- gAUGCAAGCACGCGUUGGCCACAGUGCg -3'
miRNA:   3'- -UACGUUCGUGCGCAACCGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 65780 0.78 0.27317
Target:  5'- -gGCGAGCACGCGcgcggcgucGGCgCGCGGUGCc -3'
miRNA:   3'- uaCGUUCGUGCGCaa-------CCG-GUGUCACG- -5'
6844 3' -55 NC_001875.2 + 11001 0.78 0.279916
Target:  5'- cUGCAGGCGCGCGUgc-CCAUGGUGUg -3'
miRNA:   3'- uACGUUCGUGCGCAaccGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 51566 0.77 0.31563
Target:  5'- aGUGCGAGCcguucacgacGCGCGgcgUGGCCACGuuuaacagcuuGUGCg -3'
miRNA:   3'- -UACGUUCG----------UGCGCa--ACCGGUGU-----------CACG- -5'
6844 3' -55 NC_001875.2 + 92456 0.77 0.323174
Target:  5'- gGUGCAcaGGCACGag-UGGCCGCAGgguagGCa -3'
miRNA:   3'- -UACGU--UCGUGCgcaACCGGUGUCa----CG- -5'
6844 3' -55 NC_001875.2 + 31887 0.76 0.352243
Target:  5'- uUGCAAGUugGCGaccguuuuguaaacUUGGCCGCGcUGCa -3'
miRNA:   3'- uACGUUCGugCGC--------------AACCGGUGUcACG- -5'
6844 3' -55 NC_001875.2 + 90961 0.76 0.362887
Target:  5'- -cGCgAAGCGCGCGUgcaccaggaUGGCgccCGCGGUGCg -3'
miRNA:   3'- uaCG-UUCGUGCGCA---------ACCG---GUGUCACG- -5'
6844 3' -55 NC_001875.2 + 37053 0.75 0.405861
Target:  5'- cGUGCAcGCGCGCGgacgcGGCCACGcuGUGUu -3'
miRNA:   3'- -UACGUuCGUGCGCaa---CCGGUGU--CACG- -5'
6844 3' -55 NC_001875.2 + 37591 0.74 0.432209
Target:  5'- -cGCGAGCGcCGCGgccGGCCGCAcggcggcGUGCu -3'
miRNA:   3'- uaCGUUCGU-GCGCaa-CCGGUGU-------CACG- -5'
6844 3' -55 NC_001875.2 + 62108 0.74 0.442461
Target:  5'- -cGCAGGgGCGCG-UGGCCACGaUGUc -3'
miRNA:   3'- uaCGUUCgUGCGCaACCGGUGUcACG- -5'
6844 3' -55 NC_001875.2 + 78404 0.74 0.461446
Target:  5'- aGUGCu-GCACGCGcUGGCCgu-GUGCg -3'
miRNA:   3'- -UACGuuCGUGCGCaACCGGuguCACG- -5'
6844 3' -55 NC_001875.2 + 118448 0.74 0.461446
Target:  5'- cGUGCAAGCGCGCcugGuGCCgugcguagaaACGGUGCg -3'
miRNA:   3'- -UACGUUCGUGCGcaaC-CGG----------UGUCACG- -5'
6844 3' -55 NC_001875.2 + 50002 0.73 0.510678
Target:  5'- cGUGCGgauGguCGCGcccgugaauUUGGCCACGGUGUa -3'
miRNA:   3'- -UACGUu--CguGCGC---------AACCGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 102990 0.73 0.520793
Target:  5'- cUGCGGGCACGUGgUGGCgugcgGCAaGUGCg -3'
miRNA:   3'- uACGUUCGUGCGCaACCGg----UGU-CACG- -5'
6844 3' -55 NC_001875.2 + 94236 0.73 0.520793
Target:  5'- -gGCGAGCACGCcgccGUgcggccGGCCGCGGcGCu -3'
miRNA:   3'- uaCGUUCGUGCG----CAa-----CCGGUGUCaCG- -5'
6844 3' -55 NC_001875.2 + 122118 0.73 0.520793
Target:  5'- -cGCcGGCugGCGUUcaugacagaccGGCCACgaugGGUGCa -3'
miRNA:   3'- uaCGuUCGugCGCAA-----------CCGGUG----UCACG- -5'
6844 3' -55 NC_001875.2 + 23182 0.73 0.530984
Target:  5'- cUGCGGGCACGgcCGUUGGCgguuGCAGUaGCu -3'
miRNA:   3'- uACGUUCGUGC--GCAACCGg---UGUCA-CG- -5'
6844 3' -55 NC_001875.2 + 66380 0.73 0.530984
Target:  5'- gGUuCGAGCACGUGUucgaccUGGCCACcgaccgccagcGGUGCa -3'
miRNA:   3'- -UAcGUUCGUGCGCA------ACCGGUG-----------UCACG- -5'
6844 3' -55 NC_001875.2 + 129525 0.72 0.555725
Target:  5'- cUGCAGGCcgagcuggccgagcuGCGCGc-GGCCACGGcGCg -3'
miRNA:   3'- uACGUUCG---------------UGCGCaaCCGGUGUCaCG- -5'
6844 3' -55 NC_001875.2 + 35769 0.72 0.582889
Target:  5'- uUGCAcG-GCGCGUUGuCCAUAGUGCg -3'
miRNA:   3'- uACGUuCgUGCGCAACcGGUGUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.