miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6844 3' -55 NC_001875.2 + 156 0.67 0.842622
Target:  5'- -gGCAGGCACGCGgc-GCCaaACAcGUGg -3'
miRNA:   3'- uaCGUUCGUGCGCaacCGG--UGU-CACg -5'
6844 3' -55 NC_001875.2 + 2292 0.68 0.769738
Target:  5'- gAUGCGcGCGCGCcgUGGCCGCGc-GCa -3'
miRNA:   3'- -UACGUuCGUGCGcaACCGGUGUcaCG- -5'
6844 3' -55 NC_001875.2 + 4764 0.7 0.688481
Target:  5'- aAUGCugGC-CGcCGUUGGCCGCGGc-- -3'
miRNA:   3'- -UACGuuCGuGC-GCAACCGGUGUCacg -5'
6844 3' -55 NC_001875.2 + 5542 0.67 0.822817
Target:  5'- -cGUugAGGCGCGCGUUaaggugccagucacGGCgACuGUGCg -3'
miRNA:   3'- uaCG--UUCGUGCGCAA--------------CCGgUGuCACG- -5'
6844 3' -55 NC_001875.2 + 5861 0.68 0.798322
Target:  5'- aGUGCAccAGCACGCGUUuGCCcucGCcGaUGCg -3'
miRNA:   3'- -UACGU--UCGUGCGCAAcCGG---UGuC-ACG- -5'
6844 3' -55 NC_001875.2 + 7099 0.69 0.750008
Target:  5'- cAUGC-AGCGCGCGcUGGCCgACAuUGa -3'
miRNA:   3'- -UACGuUCGUGCGCaACCGG-UGUcACg -5'
6844 3' -55 NC_001875.2 + 7140 0.66 0.88897
Target:  5'- uUGCcAG-GCGCGUUGGCCGaAGgGCc -3'
miRNA:   3'- uACGuUCgUGCGCAACCGGUgUCaCG- -5'
6844 3' -55 NC_001875.2 + 7575 0.66 0.88897
Target:  5'- -aGC-GGCACcccuguuuugGCGUgaucaaggauuuUGGCCGgCAGUGCa -3'
miRNA:   3'- uaCGuUCGUG----------CGCA------------ACCGGU-GUCACG- -5'
6844 3' -55 NC_001875.2 + 9916 0.69 0.739971
Target:  5'- -cGCGacuGGCGCGCG--GGCCgcaaguauucuaGCGGUGCu -3'
miRNA:   3'- uaCGU---UCGUGCGCaaCCGG------------UGUCACG- -5'
6844 3' -55 NC_001875.2 + 10153 0.66 0.88897
Target:  5'- -cGCAAGCGCgGCGUggUGGCCgACGa--- -3'
miRNA:   3'- uaCGUUCGUG-CGCA--ACCGG-UGUcacg -5'
6844 3' -55 NC_001875.2 + 11001 0.78 0.279916
Target:  5'- cUGCAGGCGCGCGUgc-CCAUGGUGUg -3'
miRNA:   3'- uACGUUCGUGCGCAaccGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 11925 0.68 0.788942
Target:  5'- gGUGUuuuGCGCGCGgcGcGCCgACuGUGCg -3'
miRNA:   3'- -UACGuu-CGUGCGCaaC-CGG-UGuCACG- -5'
6844 3' -55 NC_001875.2 + 11972 0.68 0.788942
Target:  5'- uUGCaAAGCACuggcgacgGCGUUGGgCGCgGGUGUg -3'
miRNA:   3'- uACG-UUCGUG--------CGCAACCgGUG-UCACG- -5'
6844 3' -55 NC_001875.2 + 12008 0.67 0.842622
Target:  5'- -cGCAGGCAcCGUGUUGGagaACGuGUGUu -3'
miRNA:   3'- uaCGUUCGU-GCGCAACCgg-UGU-CACG- -5'
6844 3' -55 NC_001875.2 + 12429 0.69 0.729834
Target:  5'- -aGCAGGCcguUGCGUgcgcGCCGCGGUGg -3'
miRNA:   3'- uaCGUUCGu--GCGCAac--CGGUGUCACg -5'
6844 3' -55 NC_001875.2 + 12673 0.72 0.582889
Target:  5'- -cGCGcGC-CGCGUUGGCCG-GGUGUg -3'
miRNA:   3'- uaCGUuCGuGCGCAACCGGUgUCACG- -5'
6844 3' -55 NC_001875.2 + 13546 0.66 0.874433
Target:  5'- uUGCAAGCGCGCcagcugcaGCCACucuUGCg -3'
miRNA:   3'- uACGUUCGUGCGcaac----CGGUGuc-ACG- -5'
6844 3' -55 NC_001875.2 + 13799 0.66 0.895877
Target:  5'- cGUGCGgguGGCGCgGCGUugccgucgcacUGGUCGCGGUa- -3'
miRNA:   3'- -UACGU---UCGUG-CGCA-----------ACCGGUGUCAcg -5'
6844 3' -55 NC_001875.2 + 16929 0.66 0.88897
Target:  5'- cGUGUuuGAGCgcaucgGCGCGUUGcGCCAC-GUGa -3'
miRNA:   3'- -UACG--UUCG------UGCGCAAC-CGGUGuCACg -5'
6844 3' -55 NC_001875.2 + 18048 0.66 0.874433
Target:  5'- aAUGCGAcauGCGCGUGgcggacaaccGGCCAagccaGGUGCu -3'
miRNA:   3'- -UACGUU---CGUGCGCaa--------CCGGUg----UCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.