miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6844 3' -55 NC_001875.2 + 24790 0.69 0.729834
Target:  5'- cAUGaCAGGUGCGUGaUUGacGCCAUAGUGUa -3'
miRNA:   3'- -UAC-GUUCGUGCGC-AAC--CGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 4764 0.7 0.688481
Target:  5'- aAUGCugGC-CGcCGUUGGCCGCGGc-- -3'
miRNA:   3'- -UACGuuCGuGC-GCAACCGGUGUCacg -5'
6844 3' -55 NC_001875.2 + 72252 0.7 0.688481
Target:  5'- cGUGCucGCGCaCGUcGGCCACGcUGCa -3'
miRNA:   3'- -UACGuuCGUGcGCAaCCGGUGUcACG- -5'
6844 3' -55 NC_001875.2 + 81360 0.7 0.698919
Target:  5'- -cGCGcGCACGCGccGGCCGCGucGCu -3'
miRNA:   3'- uaCGUuCGUGCGCaaCCGGUGUcaCG- -5'
6844 3' -55 NC_001875.2 + 79071 0.7 0.708263
Target:  5'- uGUGCAaaauguuGGC-CGCGUUGG-CGUAGUGCg -3'
miRNA:   3'- -UACGU-------UCGuGCGCAACCgGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 42197 0.7 0.709298
Target:  5'- -gGCGuuucaaauAGCGCGCGgcGGCaCGCguGGUGCu -3'
miRNA:   3'- uaCGU--------UCGUGCGCaaCCG-GUG--UCACG- -5'
6844 3' -55 NC_001875.2 + 63890 0.69 0.718579
Target:  5'- uUGCGaaaAGCGCGCGcaagguaguugauUUGGCCaACGGUcaGCa -3'
miRNA:   3'- uACGU---UCGUGCGC-------------AACCGG-UGUCA--CG- -5'
6844 3' -55 NC_001875.2 + 57392 0.69 0.719606
Target:  5'- cUGCAuguGCACGCGaUUGGCguU-GUGCa -3'
miRNA:   3'- uACGUu--CGUGCGC-AACCGguGuCACG- -5'
6844 3' -55 NC_001875.2 + 12429 0.69 0.729834
Target:  5'- -aGCAGGCcguUGCGUgcgcGCCGCGGUGg -3'
miRNA:   3'- uaCGUUCGu--GCGCAac--CGGUGUCACg -5'
6844 3' -55 NC_001875.2 + 69010 0.7 0.677992
Target:  5'- -gGCAAGCACGUGgUGGCgCGC--UGCc -3'
miRNA:   3'- uaCGUUCGUGCGCaACCG-GUGucACG- -5'
6844 3' -55 NC_001875.2 + 35518 0.71 0.646322
Target:  5'- -gGcCAAGUAUGaCGc-GGCCACGGUGCu -3'
miRNA:   3'- uaC-GUUCGUGC-GCaaCCGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 124883 0.71 0.635729
Target:  5'- cUGCAAGUACGUGUUGaGgCGCGG-GUu -3'
miRNA:   3'- uACGUUCGUGCGCAAC-CgGUGUCaCG- -5'
6844 3' -55 NC_001875.2 + 31887 0.76 0.352243
Target:  5'- uUGCAAGUugGCGaccguuuuguaaacUUGGCCGCGcUGCa -3'
miRNA:   3'- uACGUUCGugCGC--------------AACCGGUGUcACG- -5'
6844 3' -55 NC_001875.2 + 37053 0.75 0.405861
Target:  5'- cGUGCAcGCGCGCGgacgcGGCCACGcuGUGUu -3'
miRNA:   3'- -UACGUuCGUGCGCaa---CCGGUGU--CACG- -5'
6844 3' -55 NC_001875.2 + 37591 0.74 0.432209
Target:  5'- -cGCGAGCGcCGCGgccGGCCGCAcggcggcGUGCu -3'
miRNA:   3'- uaCGUUCGU-GCGCaa-CCGGUGU-------CACG- -5'
6844 3' -55 NC_001875.2 + 62108 0.74 0.442461
Target:  5'- -cGCAGGgGCGCG-UGGCCACGaUGUc -3'
miRNA:   3'- uaCGUUCgUGCGCaACCGGUGUcACG- -5'
6844 3' -55 NC_001875.2 + 129525 0.72 0.555725
Target:  5'- cUGCAGGCcgagcuggccgagcuGCGCGc-GGCCACGGcGCg -3'
miRNA:   3'- uACGUUCG---------------UGCGCaaCCGGUGUCaCG- -5'
6844 3' -55 NC_001875.2 + 35769 0.72 0.582889
Target:  5'- uUGCAcG-GCGCGUUGuCCAUAGUGCg -3'
miRNA:   3'- uACGUuCgUGCGCAACcGGUGUCACG- -5'
6844 3' -55 NC_001875.2 + 30286 0.71 0.60291
Target:  5'- uUGCAGauguuucGCaACGCGUccgUGGCCGC-GUGCa -3'
miRNA:   3'- uACGUU-------CG-UGCGCA---ACCGGUGuCACG- -5'
6844 3' -55 NC_001875.2 + 124999 0.71 0.625133
Target:  5'- cGUGCAAGUugGCGUcGGgCACGuUGUc -3'
miRNA:   3'- -UACGUUCGugCGCAaCCgGUGUcACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.