miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 5' -55.2 NC_001875.2 + 65701 0.66 0.890112
Target:  5'- cACGcCGGCcGACcacuguuccGCGGGCGGCGCCGc -3'
miRNA:   3'- cUGUcGCCGuCUG---------UGUUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 42333 0.66 0.875728
Target:  5'- aGCGGCcccaGGCGGaaGCGCAGucGCAGCGgCAu -3'
miRNA:   3'- cUGUCG----CCGUC--UGUGUU--UGUCGCgGU- -5'
6847 5' -55.2 NC_001875.2 + 127910 0.66 0.890112
Target:  5'- uGCAGCuGCAGuuucuCGCAAAgcuCAGCGCgCAg -3'
miRNA:   3'- cUGUCGcCGUCu----GUGUUU---GUCGCG-GU- -5'
6847 5' -55.2 NC_001875.2 + 113791 0.66 0.890112
Target:  5'- aGCGGCGGCAGuACGCcucguuGAACucgcccuuaaAGCGCUc -3'
miRNA:   3'- cUGUCGCCGUC-UGUG------UUUG----------UCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 7084 0.66 0.896946
Target:  5'- cGGCcuGUGcGCAGACAU--GCAGCGCg- -3'
miRNA:   3'- -CUGu-CGC-CGUCUGUGuuUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 59722 0.66 0.883038
Target:  5'- aGCAGCGGCucgcGCugGAGCAGUGguUCAg -3'
miRNA:   3'- cUGUCGCCGuc--UGugUUUGUCGC--GGU- -5'
6847 5' -55.2 NC_001875.2 + 116918 0.66 0.894921
Target:  5'- cGCGGCGGguGGCGCAcaauGACGuagagcauccacacGCGCg- -3'
miRNA:   3'- cUGUCGCCguCUGUGU----UUGU--------------CGCGgu -5'
6847 5' -55.2 NC_001875.2 + 113386 0.66 0.883038
Target:  5'- -uCAGCGGC--GCGCGAuucGC-GCGCCAc -3'
miRNA:   3'- cuGUCGCCGucUGUGUU---UGuCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 42859 0.66 0.883038
Target:  5'- cGGCGcGCcGCAGGCGCAGGuccgcCAGCGCa- -3'
miRNA:   3'- -CUGU-CGcCGUCUGUGUUU-----GUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 99377 0.66 0.890112
Target:  5'- --aAGUGGCcaaAGcgccGCACcGGCGGCGCCAg -3'
miRNA:   3'- cugUCGCCG---UC----UGUGuUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 67899 0.66 0.87349
Target:  5'- cGACAGCgccuuccucGGCAGGaacggguucggguuCAUGAugcgGCGGCGCCAc -3'
miRNA:   3'- -CUGUCG---------CCGUCU--------------GUGUU----UGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 102502 0.66 0.868187
Target:  5'- gGACcacaAGCGGUGGGCGCc-GCAGUGuCCGu -3'
miRNA:   3'- -CUG----UCGCCGUCUGUGuuUGUCGC-GGU- -5'
6847 5' -55.2 NC_001875.2 + 113536 0.66 0.868187
Target:  5'- aGCGGCGGCGGGgccaAUAAGC-GCGCgAa -3'
miRNA:   3'- cUGUCGCCGUCUg---UGUUUGuCGCGgU- -5'
6847 5' -55.2 NC_001875.2 + 42739 0.66 0.896273
Target:  5'- cGCGcGCGGC-GACGCGcauggugAGCGGCGCg- -3'
miRNA:   3'- cUGU-CGCCGuCUGUGU-------UUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 91229 0.66 0.896946
Target:  5'- aGGC-GCGuGguGGCGCccaccACGGCGCCGu -3'
miRNA:   3'- -CUGuCGC-CguCUGUGuu---UGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 74266 0.66 0.874984
Target:  5'- gGACAGCgcgacgccgcgccGGUuuacGCGCGAACAGCGCa- -3'
miRNA:   3'- -CUGUCG-------------CCGuc--UGUGUUUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 82460 0.66 0.875728
Target:  5'- cGCGGCGGCAGGaACGGuACcGcCGCCGc -3'
miRNA:   3'- cUGUCGCCGUCUgUGUU-UGuC-GCGGU- -5'
6847 5' -55.2 NC_001875.2 + 88516 0.66 0.875728
Target:  5'- cGCGGCGGCAaccacgccGACcCGcGCGcGCGCCGc -3'
miRNA:   3'- cUGUCGCCGU--------CUGuGUuUGU-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 72336 0.66 0.875728
Target:  5'- uGCGGCGGCacaugGGGCACucGAC-GCGCUu -3'
miRNA:   3'- cUGUCGCCG-----UCUGUGu-UUGuCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 4779 0.66 0.883038
Target:  5'- uGGCcGCGGCuuuGACuauuACAGcCGGCGCCc -3'
miRNA:   3'- -CUGuCGCCGu--CUG----UGUUuGUCGCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.