miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 5' -55.2 NC_001875.2 + 82957 0.71 0.638905
Target:  5'- ---cGCGGCGGGCGCGuccuCGGCGaCCGa -3'
miRNA:   3'- cuguCGCCGUCUGUGUuu--GUCGC-GGU- -5'
6847 5' -55.2 NC_001875.2 + 52507 0.73 0.514315
Target:  5'- aACAGCGGC-GcCAaAGGCAGCGCCGc -3'
miRNA:   3'- cUGUCGCCGuCuGUgUUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 77639 0.73 0.521371
Target:  5'- cGACGGCcugcacgugugucuGGUGGACGCcaacGCAGCGCCGc -3'
miRNA:   3'- -CUGUCG--------------CCGUCUGUGuu--UGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 58885 0.71 0.596787
Target:  5'- aGCAGCGuuuGCAGGcCGCGAACGcGCGCUAc -3'
miRNA:   3'- cUGUCGC---CGUCU-GUGUUUGU-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 85300 0.71 0.607295
Target:  5'- gGGCGGC-GCGGGCGCGGGCAuUGCCGc -3'
miRNA:   3'- -CUGUCGcCGUCUGUGUUUGUcGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 98394 0.71 0.614663
Target:  5'- cGACgaGGUGGCGGACGCGgacguuguguuucaAGCggacgAGCGCCAg -3'
miRNA:   3'- -CUG--UCGCCGUCUGUGU--------------UUG-----UCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 20863 0.71 0.622038
Target:  5'- aACAGCGuagauuaaauaaacuGCaaaAGGCugAGACAGCGCCGu -3'
miRNA:   3'- cUGUCGC---------------CG---UCUGugUUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 37104 0.71 0.628362
Target:  5'- cGugGGUGuGCGGGCGCGGcGCcGCGCCGg -3'
miRNA:   3'- -CugUCGC-CGUCUGUGUU-UGuCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 111111 0.71 0.638905
Target:  5'- uGCGGCGuGCAcGGCAgCAAugcgucACGGCGCCAc -3'
miRNA:   3'- cUGUCGC-CGU-CUGU-GUU------UGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 80619 0.74 0.465157
Target:  5'- gGugGGCGcGCGGaACGCGcgcucgacgGGCGGCGCCAg -3'
miRNA:   3'- -CugUCGC-CGUC-UGUGU---------UUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 62 0.74 0.427651
Target:  5'- cGGCGGCGGCGaacGACAcCAAugAcGCGCCGc -3'
miRNA:   3'- -CUGUCGCCGU---CUGU-GUUugU-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 113611 0.75 0.389398
Target:  5'- -uCGGCGGCGGGcCGCGgcggcaagagcggcGACGGCGCCGc -3'
miRNA:   3'- cuGUCGCCGUCU-GUGU--------------UUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 105594 0.81 0.175727
Target:  5'- --uGGCGGUGGACACGccGCAGCGCCAa -3'
miRNA:   3'- cugUCGCCGUCUGUGUu-UGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 124245 0.79 0.250728
Target:  5'- gGGCGGCGGCAcaauGACgACAGGCGGCGCg- -3'
miRNA:   3'- -CUGUCGCCGU----CUG-UGUUUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 37973 0.78 0.256989
Target:  5'- cGCGGCGGCcuGCGCGcuCAGCGCCGa -3'
miRNA:   3'- cUGUCGCCGucUGUGUuuGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 109129 0.77 0.319174
Target:  5'- cGACGGCGGCGgucuuggcGACGCAGAUaggcaAGCGCUAa -3'
miRNA:   3'- -CUGUCGCCGU--------CUGUGUUUG-----UCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 111792 0.77 0.319174
Target:  5'- uGACGGCGGUgcACGCGgccGACGGCGCCu -3'
miRNA:   3'- -CUGUCGCCGucUGUGU---UUGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 122098 0.77 0.326741
Target:  5'- aACGGCGGUGGACGCucAACAcGUGCCAc -3'
miRNA:   3'- cUGUCGCCGUCUGUGu-UUGU-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 68562 0.76 0.342272
Target:  5'- cGGCGGCGGCGGuCGCGcACcgcguGGCGCCGc -3'
miRNA:   3'- -CUGUCGCCGUCuGUGUuUG-----UCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 56318 0.76 0.358329
Target:  5'- uGGCGGUGGCGGGCACAuccuucAGCGguauGCGCCu -3'
miRNA:   3'- -CUGUCGCCGUCUGUGU------UUGU----CGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.