miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 5' -55.2 NC_001875.2 + 31704 1.09 0.002406
Target:  5'- cGACAGCGGCAGACACAAACAGCGCCAg -3'
miRNA:   3'- -CUGUCGCCGUCUGUGUUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 49637 0.82 0.166806
Target:  5'- -cCAGCGGC-GACACGAGCGGcCGCCGg -3'
miRNA:   3'- cuGUCGCCGuCUGUGUUUGUC-GCGGU- -5'
6847 5' -55.2 NC_001875.2 + 105594 0.81 0.175727
Target:  5'- --uGGCGGUGGACACGccGCAGCGCCAa -3'
miRNA:   3'- cugUCGCCGUCUGUGUu-UGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 54148 0.8 0.199908
Target:  5'- gGACGGCGGCAGucGCGCAAAUAcGCGCUc -3'
miRNA:   3'- -CUGUCGCCGUC--UGUGUUUGU-CGCGGu -5'
6847 5' -55.2 NC_001875.2 + 124245 0.79 0.250728
Target:  5'- gGGCGGCGGCAcaauGACgACAGGCGGCGCg- -3'
miRNA:   3'- -CUGUCGCCGU----CUG-UGUUUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 37973 0.78 0.256989
Target:  5'- cGCGGCGGCcuGCGCGcuCAGCGCCGa -3'
miRNA:   3'- cUGUCGCCGucUGUGUuuGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 83563 0.78 0.290227
Target:  5'- uGGCAcGCGGCGGACACAugaggugucccGGCggGGCGCCGc -3'
miRNA:   3'- -CUGU-CGCCGUCUGUGU-----------UUG--UCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 55147 0.77 0.314697
Target:  5'- cGACGGCGGCaccGGACACAAauACAGCcgcaccuccuuaaccGCCAu -3'
miRNA:   3'- -CUGUCGCCG---UCUGUGUU--UGUCG---------------CGGU- -5'
6847 5' -55.2 NC_001875.2 + 80890 0.77 0.319174
Target:  5'- --gAGUGGCAGagcaagucGCGCGAGCGGCGCCu -3'
miRNA:   3'- cugUCGCCGUC--------UGUGUUUGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 109129 0.77 0.319174
Target:  5'- cGACGGCGGCGgucuuggcGACGCAGAUaggcaAGCGCUAa -3'
miRNA:   3'- -CUGUCGCCGU--------CUGUGUUUG-----UCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 111792 0.77 0.319174
Target:  5'- uGACGGCGGUgcACGCGgccGACGGCGCCu -3'
miRNA:   3'- -CUGUCGCCGucUGUGU---UUGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 122098 0.77 0.326741
Target:  5'- aACGGCGGUGGACGCucAACAcGUGCCAc -3'
miRNA:   3'- cUGUCGCCGUCUGUGu-UUGU-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 36089 0.76 0.333665
Target:  5'- aGACGcgcucgcGCGGCAGcACGCGgcGGCGGCGCCGc -3'
miRNA:   3'- -CUGU-------CGCCGUC-UGUGU--UUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 68562 0.76 0.342272
Target:  5'- cGGCGGCGGCGGuCGCGcACcgcguGGCGCCGc -3'
miRNA:   3'- -CUGUCGCCGUCuGUGUuUG-----UCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 73791 0.76 0.342272
Target:  5'- uGGCGGCGGCGG-CugGAACGgcagcGCGCCGc -3'
miRNA:   3'- -CUGUCGCCGUCuGugUUUGU-----CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 145 0.76 0.350235
Target:  5'- uGACAcuGCaaGGCAGGCAC--GCGGCGCCAa -3'
miRNA:   3'- -CUGU--CG--CCGUCUGUGuuUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 77963 0.76 0.350235
Target:  5'- cGCGGCGGCGcGCACGaccaacaggccGACGGUGCCAg -3'
miRNA:   3'- cUGUCGCCGUcUGUGU-----------UUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 22899 0.76 0.358329
Target:  5'- uGCAGUugGGCGGAUugguCGGGCAGCGCCGc -3'
miRNA:   3'- cUGUCG--CCGUCUGu---GUUUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 56318 0.76 0.358329
Target:  5'- uGGCGGUGGCGGGCACAuccuucAGCGguauGCGCCu -3'
miRNA:   3'- -CUGUCGCCGUCUGUGU------UUGU----CGCGGu -5'
6847 5' -55.2 NC_001875.2 + 43599 0.76 0.358329
Target:  5'- cGGCAGCGGCGG-CGCGcGCcgcuuGCGCCGu -3'
miRNA:   3'- -CUGUCGCCGUCuGUGUuUGu----CGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.