miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6847 5' -55.2 NC_001875.2 + 62 0.74 0.427651
Target:  5'- cGGCGGCGGCGaacGACAcCAAugAcGCGCCGc -3'
miRNA:   3'- -CUGUCGCCGU---CUGU-GUUugU-CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 145 0.76 0.350235
Target:  5'- uGACAcuGCaaGGCAGGCAC--GCGGCGCCAa -3'
miRNA:   3'- -CUGU--CG--CCGUCUGUGuuUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 2670 0.71 0.628362
Target:  5'- -cCGGCGGCGccuGGgGCAAcuGCGGCGCCu -3'
miRNA:   3'- cuGUCGCCGU---CUgUGUU--UGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 3048 0.71 0.649442
Target:  5'- gGGCAGCGcGUaagAGGCGCGcAGCGGCGCg- -3'
miRNA:   3'- -CUGUCGC-CG---UCUGUGU-UUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 4425 0.69 0.732419
Target:  5'- cACGGCGGCAuGCugAcGC-GCGCCGc -3'
miRNA:   3'- cUGUCGCCGUcUGugUuUGuCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 4779 0.66 0.883038
Target:  5'- uGGCcGCGGCuuuGACuauuACAGcCGGCGCCc -3'
miRNA:   3'- -CUGuCGCCGu--CUG----UGUUuGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 7084 0.66 0.896946
Target:  5'- cGGCcuGUGcGCAGACAU--GCAGCGCg- -3'
miRNA:   3'- -CUGu-CGC-CGUCUGUGuuUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 7259 0.67 0.852436
Target:  5'- uGCAGCGGCcuGGCGCGggU--CGCCGa -3'
miRNA:   3'- cUGUCGCCGu-CUGUGUuuGucGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 9981 0.68 0.772012
Target:  5'- uGACGGCGuGCAGGCcaguauaAAACuGCGCUg -3'
miRNA:   3'- -CUGUCGC-CGUCUGug-----UUUGuCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 10443 0.67 0.852436
Target:  5'- cGCAGCaGCuuuGACGCGgcgcGGCGGCGCg- -3'
miRNA:   3'- cUGUCGcCGu--CUGUGU----UUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 10662 0.67 0.852436
Target:  5'- --gGGCGGCGGACuGCAcuUGGCGCa- -3'
miRNA:   3'- cugUCGCCGUCUG-UGUuuGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 11157 0.69 0.722265
Target:  5'- gGACGGcCGGUcgauGGCGCAcAGCAGCGCg- -3'
miRNA:   3'- -CUGUC-GCCGu---CUGUGU-UUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 11913 0.67 0.860421
Target:  5'- cGGCGGCGaGCAGGuguuuUGCGcGCGGCGCg- -3'
miRNA:   3'- -CUGUCGC-CGUCU-----GUGUuUGUCGCGgu -5'
6847 5' -55.2 NC_001875.2 + 12465 0.7 0.69135
Target:  5'- -uCAGCGGCA---GCAGACGGUGCUg -3'
miRNA:   3'- cuGUCGCCGUcugUGUUUGUCGCGGu -5'
6847 5' -55.2 NC_001875.2 + 12967 0.69 0.75244
Target:  5'- ---cGCGGCGGGCGUggGCuccGCGCCGu -3'
miRNA:   3'- cuguCGCCGUCUGUGuuUGu--CGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 13142 0.7 0.679883
Target:  5'- uGCAGCGGC-GACACGAccacGCGGUaggcgucGCCGa -3'
miRNA:   3'- cUGUCGCCGuCUGUGUU----UGUCG-------CGGU- -5'
6847 5' -55.2 NC_001875.2 + 13906 0.68 0.772012
Target:  5'- cGCGGCGGCGcGCACGccggccuGCAGCuuGCCGu -3'
miRNA:   3'- cUGUCGCCGUcUGUGUu------UGUCG--CGGU- -5'
6847 5' -55.2 NC_001875.2 + 16069 0.69 0.722265
Target:  5'- ---cGCuGUGGACGCAcACGGCGCCGg -3'
miRNA:   3'- cuguCGcCGUCUGUGUuUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 18161 0.68 0.809488
Target:  5'- uGCGGCGcGCGcGACGCcgccacuguGGCGGUGCCGg -3'
miRNA:   3'- cUGUCGC-CGU-CUGUGu--------UUGUCGCGGU- -5'
6847 5' -55.2 NC_001875.2 + 18347 0.67 0.852436
Target:  5'- aGCAGCucGGCauGGACGCcAACGGCGUg- -3'
miRNA:   3'- cUGUCG--CCG--UCUGUGuUUGUCGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.