miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 3' -55.7 NC_001875.2 + 129385 0.68 0.798393
Target:  5'- cGCCGAcCCGCGCGcaauUACGUGcaGCuAAACa- -3'
miRNA:   3'- -UGGCU-GGCGCGC----AUGCAC--CG-UUUGaa -5'
6853 3' -55.7 NC_001875.2 + 128012 0.66 0.865853
Target:  5'- -gCGGCCGCGCcgGCGUGcGCcGACg- -3'
miRNA:   3'- ugGCUGGCGCGcaUGCAC-CGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 126326 0.66 0.887748
Target:  5'- gGCCGGCguaaacugCGCGCGUGCGccGGUcguGCUg -3'
miRNA:   3'- -UGGCUG--------GCGCGCAUGCa-CCGuu-UGAa -5'
6853 3' -55.7 NC_001875.2 + 123631 0.72 0.545568
Target:  5'- gUCGACUGCGcCGUgaACGUGGCAAAg-- -3'
miRNA:   3'- uGGCUGGCGC-GCA--UGCACCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 122138 0.66 0.865853
Target:  5'- gGCgCGGCCgGCGCGcACGacGGCGAGCc- -3'
miRNA:   3'- -UG-GCUGG-CGCGCaUGCa-CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 120289 0.68 0.798393
Target:  5'- uUCGGCgGCGCGUACGaaauUGGCGguugGGCg- -3'
miRNA:   3'- uGGCUGgCGCGCAUGC----ACCGU----UUGaa -5'
6853 3' -55.7 NC_001875.2 + 118322 0.67 0.825092
Target:  5'- gGCCGGCCGCGCGcUGCa-GGUgauGAACc- -3'
miRNA:   3'- -UGGCUGGCGCGC-AUGcaCCG---UUUGaa -5'
6853 3' -55.7 NC_001875.2 + 114958 0.66 0.87189
Target:  5'- cGCCG-CUGCGCGUACGcauacaaccaggGGCGuACa- -3'
miRNA:   3'- -UGGCuGGCGCGCAUGCa-----------CCGUuUGaa -5'
6853 3' -55.7 NC_001875.2 + 113575 0.67 0.825092
Target:  5'- -gCGACCGCGUGU-CGacGGUAAACa- -3'
miRNA:   3'- ugGCUGGCGCGCAuGCa-CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 112709 0.69 0.721036
Target:  5'- cGCUGACgGCGCcgcCGUGGUAGGCg- -3'
miRNA:   3'- -UGGCUGgCGCGcauGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 111907 0.68 0.760659
Target:  5'- cGCCGGCCGCuccGUGUACG-GGCcgguGCa- -3'
miRNA:   3'- -UGGCUGGCG---CGCAUGCaCCGuu--UGaa -5'
6853 3' -55.7 NC_001875.2 + 110583 0.66 0.873377
Target:  5'- aGCCGcGCCGCGCGcGCGccUGGaCcAGCUUc -3'
miRNA:   3'- -UGGC-UGGCGCGCaUGC--ACC-GuUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 102908 0.7 0.649016
Target:  5'- gGCCGGCCGUugaaGCGgAgGUGGCGGAUg- -3'
miRNA:   3'- -UGGCUGGCG----CGCaUgCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 98928 0.67 0.825092
Target:  5'- cGCCGGuuGCGCGUGCGcgacGCGcGCg- -3'
miRNA:   3'- -UGGCUggCGCGCAUGCac--CGUuUGaa -5'
6853 3' -55.7 NC_001875.2 + 98870 0.69 0.750906
Target:  5'- cACCGugCGCGuCGUaaacacggGCGacaUGGCGAGCg- -3'
miRNA:   3'- -UGGCugGCGC-GCA--------UGC---ACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 95436 0.69 0.750906
Target:  5'- cGCCGGCCaGCGUGcGCGgcUGGCAAGa-- -3'
miRNA:   3'- -UGGCUGG-CGCGCaUGC--ACCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 93196 0.66 0.894586
Target:  5'- uCCGGCCaGCGCGcaaUACGcGGCGucACUg -3'
miRNA:   3'- uGGCUGG-CGCGC---AUGCaCCGUu-UGAa -5'
6853 3' -55.7 NC_001875.2 + 90040 0.66 0.873377
Target:  5'- cGCCGG-CGCGCGUGCc-GGCGGAa-- -3'
miRNA:   3'- -UGGCUgGCGCGCAUGcaCCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 89367 0.68 0.7798
Target:  5'- uGCgCGugCGCGUGUugcuGCGUGGCucGCc- -3'
miRNA:   3'- -UG-GCugGCGCGCA----UGCACCGuuUGaa -5'
6853 3' -55.7 NC_001875.2 + 89262 0.73 0.48594
Target:  5'- aGCUGACgCGCGCGUGCGccgaccUGGCGcGGCUg -3'
miRNA:   3'- -UGGCUG-GCGCGCAUGC------ACCGU-UUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.