miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6853 3' -55.7 NC_001875.2 + 21858 1.05 0.004167
Target:  5'- cACCGACCGCGCGUACGUGGCAAACUUg -3'
miRNA:   3'- -UGGCUGGCGCGCAUGCACCGUUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 59594 0.67 0.841996
Target:  5'- gGCCGACgUGCGCGagcacggGCGcuuUGGCGGAUUg -3'
miRNA:   3'- -UGGCUG-GCGCGCa------UGC---ACCGUUUGAa -5'
6853 3' -55.7 NC_001875.2 + 66101 0.67 0.850156
Target:  5'- cGCCGAggcCCGCGCG-GCGggcGGCGAGg-- -3'
miRNA:   3'- -UGGCU---GGCGCGCaUGCa--CCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 65379 0.66 0.894586
Target:  5'- ---aACCGCGCGcGCGUGGUggGgCUg -3'
miRNA:   3'- uggcUGGCGCGCaUGCACCGuuU-GAa -5'
6853 3' -55.7 NC_001875.2 + 19965 0.71 0.642768
Target:  5'- uCCGGCCgGCGCcucgccguugcugacGUGCGUGGcCAGACa- -3'
miRNA:   3'- uGGCUGG-CGCG---------------CAUGCACC-GUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 102908 0.7 0.649016
Target:  5'- gGCCGGCCGUugaaGCGgAgGUGGCGGAUg- -3'
miRNA:   3'- -UGGCUGGCG----CGCaUgCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 50483 0.69 0.721036
Target:  5'- gACgCGGCCgGCGCGUGCGcgcGGCAccAGCg- -3'
miRNA:   3'- -UG-GCUGG-CGCGCAUGCa--CCGU--UUGaa -5'
6853 3' -55.7 NC_001875.2 + 112709 0.69 0.721036
Target:  5'- cGCUGACgGCGCcgcCGUGGUAGGCg- -3'
miRNA:   3'- -UGGCUGgCGCGcauGCACCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 77718 0.68 0.798393
Target:  5'- uACCGACCGgGCccguuugucauGUACGUGcGCuGGCa- -3'
miRNA:   3'- -UGGCUGGCgCG-----------CAUGCAC-CGuUUGaa -5'
6853 3' -55.7 NC_001875.2 + 113575 0.67 0.825092
Target:  5'- -gCGACCGCGUGU-CGacGGUAAACa- -3'
miRNA:   3'- ugGCUGGCGCGCAuGCa-CCGUUUGaa -5'
6853 3' -55.7 NC_001875.2 + 9636 0.68 0.798393
Target:  5'- -gCGugCGCGCGccgUGCGUGuuucGCGAGCUUu -3'
miRNA:   3'- ugGCugGCGCGC---AUGCAC----CGUUUGAA- -5'
6853 3' -55.7 NC_001875.2 + 89367 0.68 0.7798
Target:  5'- uGCgCGugCGCGUGUugcuGCGUGGCucGCc- -3'
miRNA:   3'- -UG-GCugGCGCGCA----UGCACCGuuUGaa -5'
6853 3' -55.7 NC_001875.2 + 89262 0.73 0.48594
Target:  5'- aGCUGACgCGCGCGUGCGccgaccUGGCGcGGCUg -3'
miRNA:   3'- -UGGCUG-GCGCGCAUGC------ACCGU-UUGAa -5'
6853 3' -55.7 NC_001875.2 + 129385 0.68 0.798393
Target:  5'- cGCCGAcCCGCGCGcaauUACGUGcaGCuAAACa- -3'
miRNA:   3'- -UGGCU-GGCGCGC----AUGCAC--CG-UUUGaa -5'
6853 3' -55.7 NC_001875.2 + 9715 0.72 0.545568
Target:  5'- cGCCGGCCGCGCcgcgcccgaaGCGUGGCAcGugUUg -3'
miRNA:   3'- -UGGCUGGCGCGca--------UGCACCGU-UugAA- -5'
6853 3' -55.7 NC_001875.2 + 95436 0.69 0.750906
Target:  5'- cGCCGGCCaGCGUGcGCGgcUGGCAAGa-- -3'
miRNA:   3'- -UGGCUGG-CGCGCaUGC--ACCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 98928 0.67 0.825092
Target:  5'- cGCCGGuuGCGCGUGCGcgacGCGcGCg- -3'
miRNA:   3'- -UGGCUggCGCGCAUGCac--CGUuUGaa -5'
6853 3' -55.7 NC_001875.2 + 78415 0.67 0.850156
Target:  5'- cGCUGGCCGUGUGcGCGcugGGCAacAACg- -3'
miRNA:   3'- -UGGCUGGCGCGCaUGCa--CCGU--UUGaa -5'
6853 3' -55.7 NC_001875.2 + 123631 0.72 0.545568
Target:  5'- gUCGACUGCGcCGUgaACGUGGCAAAg-- -3'
miRNA:   3'- uGGCUGGCGC-GCA--UGCACCGUUUgaa -5'
6853 3' -55.7 NC_001875.2 + 12376 0.7 0.649016
Target:  5'- cGuuGGCCGaCGCGUucucuuCGaUGGCAAACUUg -3'
miRNA:   3'- -UggCUGGC-GCGCAu-----GC-ACCGUUUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.