miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 3' -57 NC_001875.2 + 93260 0.66 0.830537
Target:  5'- aGCugGCCCGuguAGAGCAggaUGGgcaCGCCGCg -3'
miRNA:   3'- cCG--UGGGCu--UUUCGU---GCCa--GCGGCGa -5'
6858 3' -57 NC_001875.2 + 49321 0.66 0.830537
Target:  5'- uGCACCUGAAAcuGGCACaGUUcCUGCa -3'
miRNA:   3'- cCGUGGGCUUU--UCGUGcCAGcGGCGa -5'
6858 3' -57 NC_001875.2 + 112381 0.66 0.833867
Target:  5'- aGGCugCgCGAAAuuucgcaguuaaagcGGCGCGGcCGCaGCa -3'
miRNA:   3'- -CCGugG-GCUUU---------------UCGUGCCaGCGgCGa -5'
6858 3' -57 NC_001875.2 + 89536 0.66 0.830537
Target:  5'- cGCGCUCGAucuGUACuuGG-CGCCGCg -3'
miRNA:   3'- cCGUGGGCUuuuCGUG--CCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 113625 0.66 0.830537
Target:  5'- cGGCgGCaaGAGcGGCgACGG-CGCCGCg -3'
miRNA:   3'- -CCG-UGggCUUuUCG-UGCCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 125359 0.66 0.830537
Target:  5'- cGGCACuCCGc---GUugGG-CGCCGUa -3'
miRNA:   3'- -CCGUG-GGCuuuuCGugCCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 39163 0.66 0.86548
Target:  5'- uGGgGCCgCGAGGcgggccGGCgguugcguggcguuuACGGUgCGCCGCUa -3'
miRNA:   3'- -CCgUGG-GCUUU------UCG---------------UGCCA-GCGGCGA- -5'
6858 3' -57 NC_001875.2 + 88521 0.66 0.862463
Target:  5'- cGGCAaccacgCCGAcccGCGCGcG-CGCCGCUa -3'
miRNA:   3'- -CCGUg-----GGCUuuuCGUGC-CaGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 108868 0.66 0.831372
Target:  5'- uGCAguCgCUGGAAAGCGCGGcggaggcguacauggCGCCGCa -3'
miRNA:   3'- cCGU--G-GGCUUUUCGUGCCa--------------GCGGCGa -5'
6858 3' -57 NC_001875.2 + 42335 0.66 0.862463
Target:  5'- cGGC-CCCaGGcgGAAGCGCaGUCGCaGCg -3'
miRNA:   3'- -CCGuGGG-CU--UUUCGUGcCAGCGgCGa -5'
6858 3' -57 NC_001875.2 + 90703 0.66 0.854776
Target:  5'- gGGUugCCG----GCGCGGcCGCCGg- -3'
miRNA:   3'- -CCGugGGCuuuuCGUGCCaGCGGCga -5'
6858 3' -57 NC_001875.2 + 31808 0.66 0.854776
Target:  5'- cGGCACgaCGAA---CGCGGcaagCGCCGCg -3'
miRNA:   3'- -CCGUGg-GCUUuucGUGCCa---GCGGCGa -5'
6858 3' -57 NC_001875.2 + 55250 0.66 0.830537
Target:  5'- aGCACauaUGGAAu--GCGGUCGCCGUUg -3'
miRNA:   3'- cCGUGg--GCUUUucgUGCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 19189 0.66 0.862463
Target:  5'- gGGCACCgCGAuu-GCACGGaCGCa--- -3'
miRNA:   3'- -CCGUGG-GCUuuuCGUGCCaGCGgcga -5'
6858 3' -57 NC_001875.2 + 90984 0.66 0.830537
Target:  5'- uGGCGCCCGcgguGCGCGucuuggcgagCGCCGUc -3'
miRNA:   3'- -CCGUGGGCuuuuCGUGCca--------GCGGCGa -5'
6858 3' -57 NC_001875.2 + 89907 0.66 0.830537
Target:  5'- uGGCGCCgCGcauauAAAGgGCGGcgCGuCCGCg -3'
miRNA:   3'- -CCGUGG-GCu----UUUCgUGCCa-GC-GGCGa -5'
6858 3' -57 NC_001875.2 + 50693 0.66 0.861703
Target:  5'- aGGCGCCUGcuuugucAAAAGCGaaaaGGUCGuuGg- -3'
miRNA:   3'- -CCGUGGGC-------UUUUCGUg---CCAGCggCga -5'
6858 3' -57 NC_001875.2 + 112715 0.66 0.830537
Target:  5'- cGGCGCcgCCGugguAGGCGC-GUCGCgCGCa -3'
miRNA:   3'- -CCGUG--GGCuu--UUCGUGcCAGCG-GCGa -5'
6858 3' -57 NC_001875.2 + 74322 0.66 0.838807
Target:  5'- aGGCGCCgGAc-AGCACGGgCGUCa-- -3'
miRNA:   3'- -CCGUGGgCUuuUCGUGCCaGCGGcga -5'
6858 3' -57 NC_001875.2 + 7020 0.66 0.862463
Target:  5'- aGUugCUGGAcguAAGCGaGGUgGCCGCg -3'
miRNA:   3'- cCGugGGCUU---UUCGUgCCAgCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.