miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 3' -57 NC_001875.2 + 70255 0.75 0.373471
Target:  5'- cGGCGCCCGA---GC-C-GUCGCCGCUa -3'
miRNA:   3'- -CCGUGGGCUuuuCGuGcCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130136 0.95 0.018948
Target:  5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130202 0.95 0.018948
Target:  5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130268 0.95 0.018948
Target:  5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130562 0.91 0.034645
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGa- -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCga -5'
6858 3' -57 NC_001875.2 + 130011 0.85 0.084447
Target:  5'- -aCACCCGAAAAGCAgGGUCGuuGCUg -3'
miRNA:   3'- ccGUGGGCUUUUCGUgCCAGCggCGA- -5'
6858 3' -57 NC_001875.2 + 130334 0.84 0.101632
Target:  5'- cGCACCCaAAAGGCAgGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGcUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 101092 0.84 0.101632
Target:  5'- gGGCGCCUauAAAAGCGgGGUCGCCGCUg -3'
miRNA:   3'- -CCGUGGGc-UUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 3425 0.76 0.312261
Target:  5'- cGGguCCC-AAGAGCGCuGGUCGUCGCa -3'
miRNA:   3'- -CCguGGGcUUUUCGUG-CCAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 130496 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130400 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 130076 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 101226 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 101292 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 101358 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 101424 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 101490 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 101556 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 101622 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 129944 1 0.008992
Target:  5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.