Results 1 - 20 of 170 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6858 | 3' | -57 | NC_001875.2 | + | 17157 | 1.1 | 0.0018 |
Target: 5'- uGGCACCCGAAAAGCACGGUCGCCGCUg -3' miRNA: 3'- -CCGUGGGCUUUUCGUGCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 17092 | 1.01 | 0.007009 |
Target: 5'- cGCACCCGAAAAGCACGGUCGUCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUGCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 130496 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 130400 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 130076 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 129944 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101622 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101556 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101226 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101160 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101292 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101358 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101490 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101424 | 1 | 0.008992 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 130268 | 0.95 | 0.018948 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 130202 | 0.95 | 0.018948 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 130136 | 0.95 | 0.018948 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGUCGCUg -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 130562 | 0.91 | 0.034645 |
Target: 5'- cGCACCCGAAAAGCAgGGUCGCCGa- -3' miRNA: 3'- cCGUGGGCUUUUCGUgCCAGCGGCga -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 130011 | 0.85 | 0.084447 |
Target: 5'- -aCACCCGAAAAGCAgGGUCGuuGCUg -3' miRNA: 3'- ccGUGGGCUUUUCGUgCCAGCggCGA- -5' |
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6858 | 3' | -57 | NC_001875.2 | + | 101092 | 0.84 | 0.101632 |
Target: 5'- gGGCGCCUauAAAAGCGgGGUCGCCGCUg -3' miRNA: 3'- -CCGUGGGc-UUUUCGUgCCAGCGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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