miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 3' -57 NC_001875.2 + 3097 0.68 0.748992
Target:  5'- uGCACgCGccGGGGCGCGGcUCGCgGCg -3'
miRNA:   3'- cCGUGgGCu-UUUCGUGCC-AGCGgCGa -5'
6858 3' -57 NC_001875.2 + 3135 0.68 0.768061
Target:  5'- cGGCgaaGCCCGcu--GCGCGGaCGCgGCg -3'
miRNA:   3'- -CCG---UGGGCuuuuCGUGCCaGCGgCGa -5'
6858 3' -57 NC_001875.2 + 3425 0.76 0.312261
Target:  5'- cGGguCCC-AAGAGCGCuGGUCGUCGCa -3'
miRNA:   3'- -CCguGGGcUUUUCGUG-CCAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 4561 0.69 0.699686
Target:  5'- cGCACgUCGgcAAGCAauGUUGCCGCg -3'
miRNA:   3'- cCGUG-GGCuuUUCGUgcCAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 7020 0.66 0.862463
Target:  5'- aGUugCUGGAcguAAGCGaGGUgGCCGCg -3'
miRNA:   3'- cCGugGGCUU---UUCGUgCCAgCGGCGa -5'
6858 3' -57 NC_001875.2 + 9012 0.68 0.748027
Target:  5'- cGGCGCaccaaauCCGAGuguGCACguuGGUCGaCCGCg -3'
miRNA:   3'- -CCGUG-------GGCUUuu-CGUG---CCAGC-GGCGa -5'
6858 3' -57 NC_001875.2 + 9727 0.73 0.47934
Target:  5'- cGCGCCCGAAGcguGGCACGuGUugagcguccacCGCCGUUc -3'
miRNA:   3'- cCGUGGGCUUU---UCGUGC-CA-----------GCGGCGA- -5'
6858 3' -57 NC_001875.2 + 11088 0.68 0.768061
Target:  5'- cGCGCCCu---GGaCACGGcCGCCGUc -3'
miRNA:   3'- cCGUGGGcuuuUC-GUGCCaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 11188 0.7 0.64896
Target:  5'- uGCGCgCCGuuguGGAGCACGa-CGCCGCg -3'
miRNA:   3'- cCGUG-GGCu---UUUCGUGCcaGCGGCGa -5'
6858 3' -57 NC_001875.2 + 12357 0.67 0.822088
Target:  5'- cGGCuucgccaaGCCCGAcgacGAGGgugcCACGGU-GCCGCUc -3'
miRNA:   3'- -CCG--------UGGGCU----UUUC----GUGCCAgCGGCGA- -5'
6858 3' -57 NC_001875.2 + 13479 0.69 0.709697
Target:  5'- cGCACUCGuacAGCG-GGcCGCCGCUg -3'
miRNA:   3'- cCGUGGGCuuuUCGUgCCaGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 16084 0.67 0.822088
Target:  5'- cGGCGCCgGuuucGGCGCa--CGCCGCUa -3'
miRNA:   3'- -CCGUGGgCuuu-UCGUGccaGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 16381 0.67 0.810847
Target:  5'- cGCGCCCGcuagcucaacgcgguAGGUGCGGuguucgUCGCCGCc -3'
miRNA:   3'- cCGUGGGCuu-------------UUCGUGCC------AGCGGCGa -5'
6858 3' -57 NC_001875.2 + 17092 1.01 0.007009
Target:  5'- cGCACCCGAAAAGCACGGUCGUCGCUg -3'
miRNA:   3'- cCGUGGGCUUUUCGUGCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 17157 1.1 0.0018
Target:  5'- uGGCACCCGAAAAGCACGGUCGCCGCUg -3'
miRNA:   3'- -CCGUGGGCUUUUCGUGCCAGCGGCGA- -5'
6858 3' -57 NC_001875.2 + 18277 0.66 0.838807
Target:  5'- uGGCGCgCCGu---GCGCGaccgCGCCGUUg -3'
miRNA:   3'- -CCGUG-GGCuuuuCGUGCca--GCGGCGA- -5'
6858 3' -57 NC_001875.2 + 18428 0.68 0.758582
Target:  5'- cGUACUCGGcgcGAGGCGCGGUCcgcgugGCgCGCg -3'
miRNA:   3'- cCGUGGGCU---UUUCGUGCCAG------CG-GCGa -5'
6858 3' -57 NC_001875.2 + 19189 0.66 0.862463
Target:  5'- gGGCACCgCGAuu-GCACGGaCGCa--- -3'
miRNA:   3'- -CCGUGG-GCUuuuCGUGCCaGCGgcga -5'
6858 3' -57 NC_001875.2 + 21077 0.69 0.689619
Target:  5'- gGGCAaaagaCGcgcGGCgGCGGUCGCCGCg -3'
miRNA:   3'- -CCGUgg---GCuuuUCG-UGCCAGCGGCGa -5'
6858 3' -57 NC_001875.2 + 21683 0.7 0.617273
Target:  5'- cGcCGCCCGAcGAGCgcgacgcggugcuGCGGUCcaGCCGCa -3'
miRNA:   3'- cC-GUGGGCUuUUCG-------------UGCCAG--CGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.