miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6858 5' -52 NC_001875.2 + 94787 0.66 0.976895
Target:  5'- --cGUGGC-CGCGuCCGcgCGCGuGCa -3'
miRNA:   3'- uuuUAUCGuGUGC-GGCaaGCGCuCGc -5'
6858 5' -52 NC_001875.2 + 68847 0.66 0.976895
Target:  5'- cGGAcgGGuCGCACG-CGUgCGCGAGUGc -3'
miRNA:   3'- -UUUuaUC-GUGUGCgGCAaGCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 39318 0.66 0.974256
Target:  5'- ----gAGaaaACGCGCCGggCGCgcacGAGCGc -3'
miRNA:   3'- uuuuaUCg--UGUGCGGCaaGCG----CUCGC- -5'
6858 5' -52 NC_001875.2 + 77261 0.66 0.974256
Target:  5'- ----gGGCGCGcCGCCGg--GCGaAGCGg -3'
miRNA:   3'- uuuuaUCGUGU-GCGGCaagCGC-UCGC- -5'
6858 5' -52 NC_001875.2 + 79131 0.66 0.974256
Target:  5'- ----cGGCGgGCGCCGcg-GCGGGCu -3'
miRNA:   3'- uuuuaUCGUgUGCGGCaagCGCUCGc -5'
6858 5' -52 NC_001875.2 + 77383 0.66 0.974256
Target:  5'- -----cGCACACGCUGUgcggCGCc-GCGg -3'
miRNA:   3'- uuuuauCGUGUGCGGCAa---GCGcuCGC- -5'
6858 5' -52 NC_001875.2 + 112715 0.66 0.974256
Target:  5'- ----cGGCGC-CGCCGUgguaggCGCGucGCGc -3'
miRNA:   3'- uuuuaUCGUGuGCGGCAa-----GCGCu-CGC- -5'
6858 5' -52 NC_001875.2 + 59238 0.66 0.974256
Target:  5'- ----aAGCuuaACGCCGagCGCGaAGCGu -3'
miRNA:   3'- uuuuaUCGug-UGCGGCaaGCGC-UCGC- -5'
6858 5' -52 NC_001875.2 + 128762 0.66 0.974256
Target:  5'- -----cGUGCACGCCGUggGCGAccccgGCGc -3'
miRNA:   3'- uuuuauCGUGUGCGGCAagCGCU-----CGC- -5'
6858 5' -52 NC_001875.2 + 31299 0.66 0.971405
Target:  5'- ---uUAcCACGCGCCGuUUUGCGAcGCa -3'
miRNA:   3'- uuuuAUcGUGUGCGGC-AAGCGCU-CGc -5'
6858 5' -52 NC_001875.2 + 100991 0.66 0.971405
Target:  5'- ----aGGC-CGCGgCGUUUGCG-GCGg -3'
miRNA:   3'- uuuuaUCGuGUGCgGCAAGCGCuCGC- -5'
6858 5' -52 NC_001875.2 + 12856 0.66 0.971405
Target:  5'- ---cUAGCACGCaGCCGUgguuggUCGUGuuGGCa -3'
miRNA:   3'- uuuuAUCGUGUG-CGGCA------AGCGC--UCGc -5'
6858 5' -52 NC_001875.2 + 55688 0.66 0.971405
Target:  5'- ---uUGGUgaACAgGCCGUUuaCGCGGGCc -3'
miRNA:   3'- uuuuAUCG--UGUgCGGCAA--GCGCUCGc -5'
6858 5' -52 NC_001875.2 + 113855 0.66 0.971405
Target:  5'- ----gGGcCGCACGuuGaaCGCGGGCa -3'
miRNA:   3'- uuuuaUC-GUGUGCggCaaGCGCUCGc -5'
6858 5' -52 NC_001875.2 + 20647 0.66 0.971405
Target:  5'- aAAAAcGGCGCGCGCCGcccaGCGcGCc -3'
miRNA:   3'- -UUUUaUCGUGUGCGGCaag-CGCuCGc -5'
6858 5' -52 NC_001875.2 + 35401 0.66 0.968334
Target:  5'- --cGUGGCGCgcgcgagcgACGCCGacaagCGCGAGUu -3'
miRNA:   3'- uuuUAUCGUG---------UGCGGCaa---GCGCUCGc -5'
6858 5' -52 NC_001875.2 + 62489 0.66 0.968334
Target:  5'- ----gGGCGCACGCCGcugacugCGCGuuucgucGCGu -3'
miRNA:   3'- uuuuaUCGUGUGCGGCaa-----GCGCu------CGC- -5'
6858 5' -52 NC_001875.2 + 33089 0.66 0.968334
Target:  5'- -uGAUGGCG-GCGCCG-UCGCG-GCu -3'
miRNA:   3'- uuUUAUCGUgUGCGGCaAGCGCuCGc -5'
6858 5' -52 NC_001875.2 + 43575 0.66 0.968334
Target:  5'- ----cAGCGuCAUGCUGgcgGCGAGCGa -3'
miRNA:   3'- uuuuaUCGU-GUGCGGCaagCGCUCGC- -5'
6858 5' -52 NC_001875.2 + 48843 0.67 0.962944
Target:  5'- ----cAGCugACGCCGUauuucgacgcaaucaUCaGCGAGgGg -3'
miRNA:   3'- uuuuaUCGugUGCGGCA---------------AG-CGCUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.