miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6859 3' -47.7 NC_001875.2 + 55734 0.66 0.999417
Target:  5'- gGCCGAGcGUGGcCAUGCgGCccucUUCGGGg -3'
miRNA:   3'- gCGGUUUuUAUC-GUGCG-CGa---AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 113157 0.66 0.999102
Target:  5'- aCGCCGGc----GCGCGCGCcgUUUGAu -3'
miRNA:   3'- -GCGGUUuuuauCGUGCGCGa-AAGCUc -5'
6859 3' -47.7 NC_001875.2 + 98874 0.66 0.999535
Target:  5'- gCGCUAAu-GUGcGCGgGCGCcgUUUCGGGa -3'
miRNA:   3'- -GCGGUUuuUAU-CGUgCGCG--AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 6967 0.66 0.999417
Target:  5'- uCGCCAc----GGCGCGCuGCUUgacagCGGGc -3'
miRNA:   3'- -GCGGUuuuuaUCGUGCG-CGAAa----GCUC- -5'
6859 3' -47.7 NC_001875.2 + 62336 0.66 0.999274
Target:  5'- uCGCCAGuuuuAAgugGGCGCGgCGCcagUUUGGGu -3'
miRNA:   3'- -GCGGUUu---UUa--UCGUGC-GCGa--AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 18679 0.66 0.999274
Target:  5'- uGCCAuaucAAAcGGCGCGCGCgc-CGGc -3'
miRNA:   3'- gCGGUu---UUUaUCGUGCGCGaaaGCUc -5'
6859 3' -47.7 NC_001875.2 + 37158 0.66 0.999404
Target:  5'- uCGCCGGGuuccAGCacccgugccGCGCGCUggcccauuucaugUUCGAGg -3'
miRNA:   3'- -GCGGUUUuua-UCG---------UGCGCGA-------------AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 49468 0.66 0.999242
Target:  5'- gCGCCGugguuccGCGCGCGCc--CGAGu -3'
miRNA:   3'- -GCGGUuuuuau-CGUGCGCGaaaGCUC- -5'
6859 3' -47.7 NC_001875.2 + 122002 0.66 0.999417
Target:  5'- cCGCCAgcGAAAUGa---GCGCUUUUGGGu -3'
miRNA:   3'- -GCGGU--UUUUAUcgugCGCGAAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 28908 0.66 0.999102
Target:  5'- cCGCCcccacaacAAGAccGUGGC-CGCGUaUUUCGAGa -3'
miRNA:   3'- -GCGG--------UUUU--UAUCGuGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 93555 0.66 0.999102
Target:  5'- uCGCCAccgcGucGUcGUACGCGCgcugCGAGg -3'
miRNA:   3'- -GCGGU----UuuUAuCGUGCGCGaaa-GCUC- -5'
6859 3' -47.7 NC_001875.2 + 66373 0.66 0.999102
Target:  5'- gCGUCGAGGuucgAGCACGUGU--UCGAc -3'
miRNA:   3'- -GCGGUUUUua--UCGUGCGCGaaAGCUc -5'
6859 3' -47.7 NC_001875.2 + 100129 0.66 0.999102
Target:  5'- uCGCCGAAAGUaaugcgccGGCGgCGCGCaagCGGc -3'
miRNA:   3'- -GCGGUUUUUA--------UCGU-GCGCGaaaGCUc -5'
6859 3' -47.7 NC_001875.2 + 118282 0.66 0.998896
Target:  5'- aCGCCAcgcaAGAGUGGCugcagcugGCGCGCUUg---- -3'
miRNA:   3'- -GCGGU----UUUUAUCG--------UGCGCGAAagcuc -5'
6859 3' -47.7 NC_001875.2 + 114746 0.66 0.998896
Target:  5'- cCGCCA---GUGGCGCGCgGCUUg---- -3'
miRNA:   3'- -GCGGUuuuUAUCGUGCG-CGAAagcuc -5'
6859 3' -47.7 NC_001875.2 + 66100 0.66 0.998896
Target:  5'- aCGCCGA----GGCcCGCGCgg-CGGGc -3'
miRNA:   3'- -GCGGUUuuuaUCGuGCGCGaaaGCUC- -5'
6859 3' -47.7 NC_001875.2 + 65074 0.66 0.999274
Target:  5'- gCGCCAAcacgcugGGCaaggACGCGCUcaaCGAGg -3'
miRNA:   3'- -GCGGUUuuua---UCG----UGCGCGAaa-GCUC- -5'
6859 3' -47.7 NC_001875.2 + 41339 0.66 0.999102
Target:  5'- aCGCCGugcAAGUGGgcCGCGCGCagUUUGAa -3'
miRNA:   3'- -GCGGUu--UUUAUC--GUGCGCGa-AAGCUc -5'
6859 3' -47.7 NC_001875.2 + 74661 0.66 0.999535
Target:  5'- gGCCGGGGcugGGCGagcUGCGCUUUCa-- -3'
miRNA:   3'- gCGGUUUUua-UCGU---GCGCGAAAGcuc -5'
6859 3' -47.7 NC_001875.2 + 9728 0.66 0.999274
Target:  5'- gCGCCcGAAgcGUGGCACGUGU---UGAGc -3'
miRNA:   3'- -GCGGuUUU--UAUCGUGCGCGaaaGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.