miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6859 3' -47.7 NC_001875.2 + 17059 1.11 0.011681
Target:  5'- cCGCCAAAAAUAGCACGCGCUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGAAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101126 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130528 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130366 0.98 0.070088
Target:  5'- cCGCUAAAAGUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101588 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101522 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101456 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCUuUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101390 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCUuUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101324 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCUuUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101258 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101192 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCUuUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130300 0.97 0.083256
Target:  5'- cCGCUAAAAAUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130234 0.97 0.083256
Target:  5'- cCGCUAAAAAUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130168 0.97 0.083256
Target:  5'- cCGCUAAAAAUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130042 0.97 0.083256
Target:  5'- cCGCUAAAAAUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 17124 0.89 0.243195
Target:  5'- cCGCCAAAAAUAGCACaCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGcGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 129977 0.84 0.444547
Target:  5'- uGCUAAAAAUAGCACGCGcCUUUCa-- -3'
miRNA:   3'- gCGGUUUUUAUCGUGCGC-GAAAGcuc -5'
6859 3' -47.7 NC_001875.2 + 130454 0.8 0.612568
Target:  5'- gCGCCGcuGAcgcaccgcUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUuuUU--------AUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 17190 0.79 0.689235
Target:  5'- cCGCCAAAAAUAGCACaCGCcguucgCGAGc -3'
miRNA:   3'- -GCGGUUUUUAUCGUGcGCGaaa---GCUC- -5'
6859 3' -47.7 NC_001875.2 + 87662 0.78 0.732072
Target:  5'- gCGCCGAcgGUcAGCGCGUGCgaaaUCGAGg -3'
miRNA:   3'- -GCGGUUuuUA-UCGUGCGCGaa--AGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.