miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6859 3' -47.7 NC_001875.2 + 125263 0.72 0.956357
Target:  5'- uGUCGAcuAUgaAGCugGCGCUgUCGGGg -3'
miRNA:   3'- gCGGUUuuUA--UCGugCGCGAaAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130234 0.97 0.083256
Target:  5'- cCGCUAAAAAUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130300 0.97 0.083256
Target:  5'- cCGCUAAAAAUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 129977 0.84 0.444547
Target:  5'- uGCUAAAAAUAGCACGCGcCUUUCa-- -3'
miRNA:   3'- gCGGUUUUUAUCGUGCGC-GAAAGcuc -5'
6859 3' -47.7 NC_001875.2 + 130454 0.8 0.612568
Target:  5'- gCGCCGcuGAcgcaccgcUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUuuUU--------AUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 52514 0.76 0.839476
Target:  5'- gCGCCAAAGGcAGCGcCGCGCUcaUCGAa -3'
miRNA:   3'- -GCGGUUUUUaUCGU-GCGCGAa-AGCUc -5'
6859 3' -47.7 NC_001875.2 + 51025 0.75 0.848137
Target:  5'- aCGCCGAGucgAGCACGUGUUUaaaguccaagUCGAGc -3'
miRNA:   3'- -GCGGUUUuuaUCGUGCGCGAA----------AGCUC- -5'
6859 3' -47.7 NC_001875.2 + 27191 0.74 0.915083
Target:  5'- cCGUCAG--GUGGCACGCGCUaggaUCGGc -3'
miRNA:   3'- -GCGGUUuuUAUCGUGCGCGAa---AGCUc -5'
6859 3' -47.7 NC_001875.2 + 33472 0.72 0.952144
Target:  5'- gGUCGAAAGUGGCGCGcCGCgcgcUGGGg -3'
miRNA:   3'- gCGGUUUUUAUCGUGC-GCGaaa-GCUC- -5'
6859 3' -47.7 NC_001875.2 + 130168 0.97 0.083256
Target:  5'- cCGCUAAAAAUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130042 0.97 0.083256
Target:  5'- cCGCUAAAAAUAGCACGCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130528 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101192 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCUuUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101258 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101324 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCUuUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101390 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCUuUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101456 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCUuUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGA-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101522 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 101588 0.98 0.070088
Target:  5'- cCGCUAAAAAUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 130366 0.98 0.070088
Target:  5'- cCGCUAAAAGUAGCACGCGCcUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCG-AAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.