miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6859 3' -47.7 NC_001875.2 + 3911 0.72 0.947666
Target:  5'- gGCUAAGAAgcuGCGCGCugaGCUUUgCGAGa -3'
miRNA:   3'- gCGGUUUUUau-CGUGCG---CGAAA-GCUC- -5'
6859 3' -47.7 NC_001875.2 + 6445 0.7 0.981258
Target:  5'- gCGCCGucguAGUAGCGCGCGgugUUCGu- -3'
miRNA:   3'- -GCGGUuu--UUAUCGUGCGCga-AAGCuc -5'
6859 3' -47.7 NC_001875.2 + 6967 0.66 0.999417
Target:  5'- uCGCCAc----GGCGCGCuGCUUgacagCGGGc -3'
miRNA:   3'- -GCGGUuuuuaUCGUGCG-CGAAa----GCUC- -5'
6859 3' -47.7 NC_001875.2 + 7029 0.66 0.999535
Target:  5'- aCGUaagcGAGGUGGcCGCGCGCUUgUCGGc -3'
miRNA:   3'- -GCGgu--UUUUAUC-GUGCGCGAA-AGCUc -5'
6859 3' -47.7 NC_001875.2 + 7091 0.67 0.998651
Target:  5'- uGCgCAGAcAUgcAGCGCGCGCUggcCGAc -3'
miRNA:   3'- gCG-GUUUuUA--UCGUGCGCGAaa-GCUc -5'
6859 3' -47.7 NC_001875.2 + 9728 0.66 0.999274
Target:  5'- gCGCCcGAAgcGUGGCACGUGU---UGAGc -3'
miRNA:   3'- -GCGGuUUU--UAUCGUGCGCGaaaGCUC- -5'
6859 3' -47.7 NC_001875.2 + 12137 0.71 0.97067
Target:  5'- gCGCgGAAGAgcccgAGCGCaaccaGCGCUUUCGGc -3'
miRNA:   3'- -GCGgUUUUUa----UCGUG-----CGCGAAAGCUc -5'
6859 3' -47.7 NC_001875.2 + 17059 1.11 0.011681
Target:  5'- cCGCCAAAAAUAGCACGCGCUUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGCGCGAAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 17124 0.89 0.243195
Target:  5'- cCGCCAAAAAUAGCACaCGCcgUUCGAGa -3'
miRNA:   3'- -GCGGUUUUUAUCGUGcGCGa-AAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 17190 0.79 0.689235
Target:  5'- cCGCCAAAAAUAGCACaCGCcguucgCGAGc -3'
miRNA:   3'- -GCGGUUUUUAUCGUGcGCGaaa---GCUC- -5'
6859 3' -47.7 NC_001875.2 + 18679 0.66 0.999274
Target:  5'- uGCCAuaucAAAcGGCGCGCGCgc-CGGc -3'
miRNA:   3'- gCGGUu---UUUaUCGUGCGCGaaaGCUc -5'
6859 3' -47.7 NC_001875.2 + 19039 0.66 0.999535
Target:  5'- uGCuCGAuuauGUGGC-CGCGC--UCGAGg -3'
miRNA:   3'- gCG-GUUuu--UAUCGuGCGCGaaAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 26266 0.68 0.994503
Target:  5'- cCGCCAAGAuGUA-CACGCGCc-UUGAGu -3'
miRNA:   3'- -GCGGUUUU-UAUcGUGCGCGaaAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 26768 0.69 0.991042
Target:  5'- uCGCCGuagcacucguugAGCgACGCGCcgUCGAGg -3'
miRNA:   3'- -GCGGUuuuua-------UCG-UGCGCGaaAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 27191 0.74 0.915083
Target:  5'- cCGUCAG--GUGGCACGCGCUaggaUCGGc -3'
miRNA:   3'- -GCGGUUuuUAUCGUGCGCGAa---AGCUc -5'
6859 3' -47.7 NC_001875.2 + 27234 0.69 0.991414
Target:  5'- gGCCGAcGAgGGUaucaaaGCGaCGCUUUCGAGc -3'
miRNA:   3'- gCGGUUuUUaUCG------UGC-GCGAAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 28908 0.66 0.999102
Target:  5'- cCGCCcccacaacAAGAccGUGGC-CGCGUaUUUCGAGa -3'
miRNA:   3'- -GCGG--------UUUU--UAUCGuGCGCG-AAAGCUC- -5'
6859 3' -47.7 NC_001875.2 + 32867 0.67 0.998651
Target:  5'- gGCCAAAAGUAGCGuucgcugcaGCGCUgcaaaCGGc -3'
miRNA:   3'- gCGGUUUUUAUCGUg--------CGCGAaa---GCUc -5'
6859 3' -47.7 NC_001875.2 + 33472 0.72 0.952144
Target:  5'- gGUCGAAAGUGGCGCGcCGCgcgcUGGGg -3'
miRNA:   3'- gCGGUUUUUAUCGUGC-GCGaaa-GCUC- -5'
6859 3' -47.7 NC_001875.2 + 34099 0.7 0.985328
Target:  5'- uGCCGGGGuugcacgAGCGCGCGCgcUCGcGg -3'
miRNA:   3'- gCGGUUUUua-----UCGUGCGCGaaAGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.