Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6859 | 5' | -53.8 | NC_001875.2 | + | 102570 | 0.66 | 0.956404 |
Target: 5'- gCGCCCcgccGGCGCGGUCGgcggccgCGCa-- -3' miRNA: 3'- -GUGGGcuuuUCGUGCCAGCa------GCGacu -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 48824 | 0.66 | 0.952411 |
Target: 5'- gCACUCGcuGcGCGCGGUCca-GCUGAc -3' miRNA: 3'- -GUGGGCuuUuCGUGCCAGcagCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 66112 | 0.66 | 0.943706 |
Target: 5'- uGCCCGuguacAGCugGccGUCGUCGCg-- -3' miRNA: 3'- gUGGGCuuu--UCGugC--CAGCAGCGacu -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 73059 | 0.66 | 0.943706 |
Target: 5'- uCGCgUCGaAAAAGCGCacGUCGUCGUUGGc -3' miRNA: 3'- -GUG-GGC-UUUUCGUGc-CAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 95528 | 0.66 | 0.943706 |
Target: 5'- aGCCCc---AGCGCGGgaucgcauUCGaUCGCUGAg -3' miRNA: 3'- gUGGGcuuuUCGUGCC--------AGC-AGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 113867 | 0.67 | 0.928811 |
Target: 5'- uCGCCCGAAuccaGAGUggGGaCG-CGCUGGc -3' miRNA: 3'- -GUGGGCUU----UUCGugCCaGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 44352 | 0.67 | 0.928811 |
Target: 5'- aGCUCGAucGGGCAgCGGUCG-CGCUu- -3' miRNA: 3'- gUGGGCUu-UUCGU-GCCAGCaGCGAcu -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 73346 | 0.67 | 0.928811 |
Target: 5'- -uUUCGAAAcgcAGCGCGGUC-UCGUUGGc -3' miRNA: 3'- guGGGCUUU---UCGUGCCAGcAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 107553 | 0.67 | 0.92335 |
Target: 5'- cCGCCCuaugGAcAAGCGCGGcgcCGUCGCa-- -3' miRNA: 3'- -GUGGG----CUuUUCGUGCCa--GCAGCGacu -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 93842 | 0.67 | 0.92335 |
Target: 5'- uGCCCGuaauGCaccaACGGUUGUcggCGCUGAg -3' miRNA: 3'- gUGGGCuuuuCG----UGCCAGCA---GCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 29281 | 0.67 | 0.919954 |
Target: 5'- gCGCCgGcgGGGCGCGGUCGUguggcgugucgugcgCGUUGu -3' miRNA: 3'- -GUGGgCuuUUCGUGCCAGCA---------------GCGACu -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 65771 | 0.67 | 0.91764 |
Target: 5'- uGCgCGGcgGGCggcgGCGcGUCGUCGUUGAg -3' miRNA: 3'- gUGgGCUuuUCG----UGC-CAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 50685 | 0.67 | 0.911683 |
Target: 5'- gGCCCGAAAGGCGCcugcuuuGUCaaaagcgaaaagGUCGUUGGu -3' miRNA: 3'- gUGGGCUUUUCGUGc------CAG------------CAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 22577 | 0.67 | 0.911683 |
Target: 5'- aCGCCCG---GGCGCGG-CG-CGUUGGc -3' miRNA: 3'- -GUGGGCuuuUCGUGCCaGCaGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 55844 | 0.68 | 0.905479 |
Target: 5'- aAgCCGAAcucGCGCaaaagguccgGGUCGUUGCUGAg -3' miRNA: 3'- gUgGGCUUuu-CGUG----------CCAGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 21685 | 0.68 | 0.892344 |
Target: 5'- cCGCCCGAcGAGCGCGacgCGgUGCUGc -3' miRNA: 3'- -GUGGGCUuUUCGUGCca-GCaGCGACu -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 109986 | 0.68 | 0.892344 |
Target: 5'- uGCCaCGuac-GCGCGGUCGguggCGUUGAc -3' miRNA: 3'- gUGG-GCuuuuCGUGCCAGCa---GCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 110277 | 0.68 | 0.892344 |
Target: 5'- gGCCgCGGAgcGCGCGGgcugcccCGUCGCcGAg -3' miRNA: 3'- gUGG-GCUUuuCGUGCCa------GCAGCGaCU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 80398 | 0.68 | 0.884005 |
Target: 5'- -cCCCGAucagcgauuuuAGCACGGcacgaaacUCGUCGUUGGa -3' miRNA: 3'- guGGGCUuu---------UCGUGCC--------AGCAGCGACU- -5' |
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6859 | 5' | -53.8 | NC_001875.2 | + | 64963 | 0.68 | 0.87826 |
Target: 5'- gCGCCgCGAAuuAGGcCGCGGUCGugcacguagUCGCUGu -3' miRNA: 3'- -GUGG-GCUU--UUC-GUGCCAGC---------AGCGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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