miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6863 3' -56 NC_001875.2 + 81357 0.66 0.884246
Target:  5'- uGCCGcGCGCAc-GCGCCggccGCGUcGCu -3'
miRNA:   3'- cCGGCaCGCGUuuCGCGGa---UGCAcUG- -5'
6863 3' -56 NC_001875.2 + 12972 0.66 0.869744
Target:  5'- cGGgCGUGgGCuccGCGCCgugGUGGCu -3'
miRNA:   3'- -CCgGCACgCGuuuCGCGGaugCACUG- -5'
6863 3' -56 NC_001875.2 + 121162 0.66 0.854368
Target:  5'- aGCCGU-UGCGGcAGCGCCUGCGc--- -3'
miRNA:   3'- cCGGCAcGCGUU-UCGCGGAUGCacug -5'
6863 3' -56 NC_001875.2 + 43897 0.66 0.854368
Target:  5'- uGGUCuUGCagagGCGGGGCGUUUGCgGUGGCa -3'
miRNA:   3'- -CCGGcACG----CGUUUCGCGGAUG-CACUG- -5'
6863 3' -56 NC_001875.2 + 21262 0.66 0.884246
Target:  5'- aGGCgCGcGCGCGgcGCGgCUACGagcacGACa -3'
miRNA:   3'- -CCG-GCaCGCGUuuCGCgGAUGCa----CUG- -5'
6863 3' -56 NC_001875.2 + 29308 0.66 0.884246
Target:  5'- uGUCGUGCGCGuuguuGCGCacaaACG-GACa -3'
miRNA:   3'- cCGGCACGCGUuu---CGCGga--UGCaCUG- -5'
6863 3' -56 NC_001875.2 + 54693 0.66 0.877107
Target:  5'- uGCCGUcCGCAAAGCauuuguacuGCCUggcgacggGCGUGgACa -3'
miRNA:   3'- cCGGCAcGCGUUUCG---------CGGA--------UGCAC-UG- -5'
6863 3' -56 NC_001875.2 + 98935 0.66 0.854368
Target:  5'- uGCgCGUGCGCGAcGCGC--GCGUGu- -3'
miRNA:   3'- cCG-GCACGCGUUuCGCGgaUGCACug -5'
6863 3' -56 NC_001875.2 + 54098 0.66 0.891157
Target:  5'- gGGUCGaUGCGCugccAGCGCacgUACaUGACa -3'
miRNA:   3'- -CCGGC-ACGCGuu--UCGCGg--AUGcACUG- -5'
6863 3' -56 NC_001875.2 + 37978 0.66 0.891157
Target:  5'- cGGCC-UGCGCGcucAGCGCCgacaaccgUugGUG-Ca -3'
miRNA:   3'- -CCGGcACGCGUu--UCGCGG--------AugCACuG- -5'
6863 3' -56 NC_001875.2 + 111725 0.66 0.887039
Target:  5'- cGCCGacgUGCGCGAacaccugcgaauuggGGCGCCcaucACGUG-Cg -3'
miRNA:   3'- cCGGC---ACGCGUU---------------UCGCGGa---UGCACuG- -5'
6863 3' -56 NC_001875.2 + 98039 0.66 0.877107
Target:  5'- cGCCGUGCGCcGAcgggcaaguGCGCCUA---GACc -3'
miRNA:   3'- cCGGCACGCGuUU---------CGCGGAUgcaCUG- -5'
6863 3' -56 NC_001875.2 + 90031 0.66 0.862162
Target:  5'- uGGCCGcgGCGCc-GGCGC--GCGUGcCg -3'
miRNA:   3'- -CCGGCa-CGCGuuUCGCGgaUGCACuG- -5'
6863 3' -56 NC_001875.2 + 82184 0.66 0.854368
Target:  5'- aGGUCGUGCuCGAugGGCGCCgGCGgccGCu -3'
miRNA:   3'- -CCGGCACGcGUU--UCGCGGaUGCac-UG- -5'
6863 3' -56 NC_001875.2 + 124699 0.66 0.862162
Target:  5'- uGGCCcuucgGC-CAAcGCGCCUggcaagcggcGCGUGGCg -3'
miRNA:   3'- -CCGGca---CGcGUUuCGCGGA----------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 37428 0.66 0.868995
Target:  5'- aGGCCGUgGCGCAGucggcggccaaauAGCcGCCgcaAUG-GACa -3'
miRNA:   3'- -CCGGCA-CGCGUU-------------UCG-CGGa--UGCaCUG- -5'
6863 3' -56 NC_001875.2 + 32806 0.66 0.854368
Target:  5'- cGCCGgcaaGCucgGCGAacGGCGCCgcuugcgaGCGUGGCa -3'
miRNA:   3'- cCGGCa---CG---CGUU--UCGCGGa-------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 111896 0.66 0.884246
Target:  5'- cGGaCCGUGCGCGccG-GCCgcucCGUGuACg -3'
miRNA:   3'- -CC-GGCACGCGUuuCgCGGau--GCAC-UG- -5'
6863 3' -56 NC_001875.2 + 119056 0.66 0.891157
Target:  5'- cGG-CGUGCGCAugugcgcGGCGCCc-CGgcugGACa -3'
miRNA:   3'- -CCgGCACGCGUu------UCGCGGauGCa---CUG- -5'
6863 3' -56 NC_001875.2 + 67140 0.66 0.884246
Target:  5'- cGCCGUGuUGCugcGGCuGUCUGCGcggGACa -3'
miRNA:   3'- cCGGCAC-GCGuu-UCG-CGGAUGCa--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.