miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6863 3' -56 NC_001875.2 + 14226 1.11 0.001691
Target:  5'- gGGCCGUGCGCAAAGCGCCUACGUGACu -3'
miRNA:   3'- -CCGGCACGCGUUUCGCGGAUGCACUG- -5'
6863 3' -56 NC_001875.2 + 14178 1.11 0.001691
Target:  5'- gGGCCGUGCGCAAAGCGCCUACGUGACu -3'
miRNA:   3'- -CCGGCACGCGUUUCGCGGAUGCACUG- -5'
6863 3' -56 NC_001875.2 + 101165 0.82 0.149009
Target:  5'- uGGCCGUGCGCGuGGCGCUggucaauUACGUGcCg -3'
miRNA:   3'- -CCGGCACGCGUuUCGCGG-------AUGCACuG- -5'
6863 3' -56 NC_001875.2 + 19950 0.79 0.23208
Target:  5'- cGGCCG-GCGCGAcgguccggccGGCGCCUcgccguugcugacguGCGUGGCc -3'
miRNA:   3'- -CCGGCaCGCGUU----------UCGCGGA---------------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 111795 0.75 0.392795
Target:  5'- cGGCgGUGCacGCGGccgacGGCGCCUggcugcuccGCGUGACg -3'
miRNA:   3'- -CCGgCACG--CGUU-----UCGCGGA---------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 19106 0.75 0.401383
Target:  5'- gGGCCGUguugcugugcGCGCGAcGCGCCUACcacGGCg -3'
miRNA:   3'- -CCGGCA----------CGCGUUuCGCGGAUGca-CUG- -5'
6863 3' -56 NC_001875.2 + 65797 0.74 0.427846
Target:  5'- cGUCG-GCGCGcGGUGCCUGCGcGGCg -3'
miRNA:   3'- cCGGCaCGCGUuUCGCGGAUGCaCUG- -5'
6863 3' -56 NC_001875.2 + 42906 0.74 0.464681
Target:  5'- aGGCUGUGCGCcgcaugccguGGGCGUCgcagucaaACGUGGCg -3'
miRNA:   3'- -CCGGCACGCGu---------UUCGCGGa-------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 85215 0.73 0.5031
Target:  5'- gGGCCGccGCGCGGuAGCGCCgcAUGUcGACg -3'
miRNA:   3'- -CCGGCa-CGCGUU-UCGCGGa-UGCA-CUG- -5'
6863 3' -56 NC_001875.2 + 9706 0.73 0.5031
Target:  5'- cGUCGUGCGCGccggccGCGCCgcgcccgaaGCGUGGCa -3'
miRNA:   3'- cCGGCACGCGUuu----CGCGGa--------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 103001 0.73 0.512923
Target:  5'- uGGUggCGUGCgGCAAGuGCGCUgcggGCGUGACc -3'
miRNA:   3'- -CCG--GCACG-CGUUU-CGCGGa---UGCACUG- -5'
6863 3' -56 NC_001875.2 + 59593 0.73 0.522824
Target:  5'- uGGCCGacgUGCGCGAgcacgGGCGCUUugGcggauUGGCg -3'
miRNA:   3'- -CCGGC---ACGCGUU-----UCGCGGAugC-----ACUG- -5'
6863 3' -56 NC_001875.2 + 89362 0.72 0.532797
Target:  5'- cGG-CGUGCGCGu-GCGCguguugCUGCGUGGCu -3'
miRNA:   3'- -CCgGCACGCGUuuCGCG------GAUGCACUG- -5'
6863 3' -56 NC_001875.2 + 40834 0.72 0.542838
Target:  5'- cGGCCGUGgGCAAgacGGCGCUcGCcaaGACg -3'
miRNA:   3'- -CCGGCACgCGUU---UCGCGGaUGca-CUG- -5'
6863 3' -56 NC_001875.2 + 71915 0.72 0.552941
Target:  5'- uGGgCGUGCGCGucggcGAGCGCCU---UGACc -3'
miRNA:   3'- -CCgGCACGCGU-----UUCGCGGAugcACUG- -5'
6863 3' -56 NC_001875.2 + 110693 0.72 0.552941
Target:  5'- cGGCC--GCGgAGGGCGCCgcguuCGUGGCu -3'
miRNA:   3'- -CCGGcaCGCgUUUCGCGGau---GCACUG- -5'
6863 3' -56 NC_001875.2 + 43812 0.72 0.563099
Target:  5'- uGGCUGcUGCGC-GGGCGUUUGCGcgGGCg -3'
miRNA:   3'- -CCGGC-ACGCGuUUCGCGGAUGCa-CUG- -5'
6863 3' -56 NC_001875.2 + 83021 0.72 0.563099
Target:  5'- uGGaCCGcGCGCAGcgaguGCGCC-ACGUGAUc -3'
miRNA:   3'- -CC-GGCaCGCGUUu----CGCGGaUGCACUG- -5'
6863 3' -56 NC_001875.2 + 41438 0.72 0.573306
Target:  5'- gGGCCGcUGCGCGcgcacAGGCGCCgguUGcGGCg -3'
miRNA:   3'- -CCGGC-ACGCGU-----UUCGCGGau-GCaCUG- -5'
6863 3' -56 NC_001875.2 + 11570 0.71 0.583556
Target:  5'- cGCCGaagcggggaGCGguGuGCGCCUACGUGAg -3'
miRNA:   3'- cCGGCa--------CGCguUuCGCGGAUGCACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.