miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6863 3' -56 NC_001875.2 + 39165 0.7 0.686763
Target:  5'- gGGCCGcgagGCGgGccGGCGgUUGCGUGGCg -3'
miRNA:   3'- -CCGGCa---CGCgUu-UCGCgGAUGCACUG- -5'
6863 3' -56 NC_001875.2 + 12432 0.71 0.635196
Target:  5'- aGGCCGuUGCGUgc-GCGCC-GCGgugGACg -3'
miRNA:   3'- -CCGGC-ACGCGuuuCGCGGaUGCa--CUG- -5'
6863 3' -56 NC_001875.2 + 119017 0.7 0.655891
Target:  5'- cGCCGgguuUGUGUucGAAGaCGCCUACGUaGACu -3'
miRNA:   3'- cCGGC----ACGCG--UUUC-GCGGAUGCA-CUG- -5'
6863 3' -56 NC_001875.2 + 54969 0.7 0.66415
Target:  5'- uGCCGgacgcgucgcucGCGCuGGGCGCCUuucguuuCGUGGCg -3'
miRNA:   3'- cCGGCa-----------CGCGuUUCGCGGAu------GCACUG- -5'
6863 3' -56 NC_001875.2 + 16252 0.7 0.666213
Target:  5'- aGGCCGUcacGCGCGu-GCGUC-ACGUGGu -3'
miRNA:   3'- -CCGGCA---CGCGUuuCGCGGaUGCACUg -5'
6863 3' -56 NC_001875.2 + 29213 0.7 0.666213
Target:  5'- gGGCCacuccgcaaagGUGCGCAAAcGCGCggCUucCGUGGCa -3'
miRNA:   3'- -CCGG-----------CACGCGUUU-CGCG--GAu-GCACUG- -5'
6863 3' -56 NC_001875.2 + 53891 0.7 0.666213
Target:  5'- cGGCCGccgcgGCGCAAAuaauugugggcGCGCCguUGCG-GGCg -3'
miRNA:   3'- -CCGGCa----CGCGUUU-----------CGCGG--AUGCaCUG- -5'
6863 3' -56 NC_001875.2 + 7084 0.7 0.676507
Target:  5'- cGGCCuGUGCGCAGacaugcAGCGC--GCGcUGGCc -3'
miRNA:   3'- -CCGG-CACGCGUU------UCGCGgaUGC-ACUG- -5'
6863 3' -56 NC_001875.2 + 41171 0.7 0.686763
Target:  5'- -aCUGUGCGCAGccccAGCGCCaGCGUaGAg -3'
miRNA:   3'- ccGGCACGCGUU----UCGCGGaUGCA-CUg -5'
6863 3' -56 NC_001875.2 + 99755 0.71 0.624841
Target:  5'- cGCUGUGUGCGuuuGGCGCCguuguUGCG-GGCu -3'
miRNA:   3'- cCGGCACGCGUu--UCGCGG-----AUGCaCUG- -5'
6863 3' -56 NC_001875.2 + 16939 0.71 0.624841
Target:  5'- cGCaucgGCGCGuuGCGCC-ACGUGACc -3'
miRNA:   3'- cCGgca-CGCGUuuCGCGGaUGCACUG- -5'
6863 3' -56 NC_001875.2 + 19560 0.71 0.621735
Target:  5'- cGGCgaguuuuuugacuuUGUGCGCcaaguuAAGCGCCUAUuUGACa -3'
miRNA:   3'- -CCG--------------GCACGCGu-----UUCGCGGAUGcACUG- -5'
6863 3' -56 NC_001875.2 + 19106 0.75 0.401383
Target:  5'- gGGCCGUguugcugugcGCGCGAcGCGCCUACcacGGCg -3'
miRNA:   3'- -CCGGCA----------CGCGUUuCGCGGAUGca-CUG- -5'
6863 3' -56 NC_001875.2 + 42906 0.74 0.464681
Target:  5'- aGGCUGUGCGCcgcaugccguGGGCGUCgcagucaaACGUGGCg -3'
miRNA:   3'- -CCGGCACGCGu---------UUCGCGGa-------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 85215 0.73 0.5031
Target:  5'- gGGCCGccGCGCGGuAGCGCCgcAUGUcGACg -3'
miRNA:   3'- -CCGGCa-CGCGUU-UCGCGGa-UGCA-CUG- -5'
6863 3' -56 NC_001875.2 + 40834 0.72 0.542838
Target:  5'- cGGCCGUGgGCAAgacGGCGCUcGCcaaGACg -3'
miRNA:   3'- -CCGGCACgCGUU---UCGCGGaUGca-CUG- -5'
6863 3' -56 NC_001875.2 + 71915 0.72 0.552941
Target:  5'- uGGgCGUGCGCGucggcGAGCGCCU---UGACc -3'
miRNA:   3'- -CCgGCACGCGU-----UUCGCGGAugcACUG- -5'
6863 3' -56 NC_001875.2 + 110693 0.72 0.552941
Target:  5'- cGGCC--GCGgAGGGCGCCgcguuCGUGGCu -3'
miRNA:   3'- -CCGGcaCGCgUUUCGCGGau---GCACUG- -5'
6863 3' -56 NC_001875.2 + 83021 0.72 0.563099
Target:  5'- uGGaCCGcGCGCAGcgaguGCGCC-ACGUGAUc -3'
miRNA:   3'- -CC-GGCaCGCGUUu----CGCGGaUGCACUG- -5'
6863 3' -56 NC_001875.2 + 11570 0.71 0.583556
Target:  5'- cGCCGaagcggggaGCGguGuGCGCCUACGUGAg -3'
miRNA:   3'- cCGGCa--------CGCguUuCGCGGAUGCACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.