miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6863 3' -56 NC_001875.2 + 1146 0.68 0.756738
Target:  5'- aGGCCGUG-GCAAaaguGGgGCC-GCGUGcCg -3'
miRNA:   3'- -CCGGCACgCGUU----UCgCGGaUGCACuG- -5'
6863 3' -56 NC_001875.2 + 3311 0.67 0.838168
Target:  5'- gGGCUGUauuuauagGCGCGAuaagcgggacgGGCGCCU-CGUGuCc -3'
miRNA:   3'- -CCGGCA--------CGCGUU-----------UCGCGGAuGCACuG- -5'
6863 3' -56 NC_001875.2 + 3839 0.67 0.812451
Target:  5'- cGCCG-GCGCGGccGCaGCCUccaacAUGUGACg -3'
miRNA:   3'- cCGGCaCGCGUUu-CG-CGGA-----UGCACUG- -5'
6863 3' -56 NC_001875.2 + 5195 0.69 0.726236
Target:  5'- cGGCC-UGCugauaGUggGGCgauaacgcugaugGCCUACGUGACu -3'
miRNA:   3'- -CCGGcACG-----CGuuUCG-------------CGGAUGCACUG- -5'
6863 3' -56 NC_001875.2 + 7013 0.66 0.875652
Target:  5'- uGGCCGgcgGCGCGuaucugaccuuuAGCGCCgccACGcUGGu -3'
miRNA:   3'- -CCGGCa--CGCGUu-----------UCGCGGa--UGC-ACUg -5'
6863 3' -56 NC_001875.2 + 7084 0.7 0.676507
Target:  5'- cGGCCuGUGCGCAGacaugcAGCGC--GCGcUGGCc -3'
miRNA:   3'- -CCGG-CACGCGUU------UCGCGgaUGC-ACUG- -5'
6863 3' -56 NC_001875.2 + 9706 0.73 0.5031
Target:  5'- cGUCGUGCGCGccggccGCGCCgcgcccgaaGCGUGGCa -3'
miRNA:   3'- cCGGCACGCGUuu----CGCGGa--------UGCACUG- -5'
6863 3' -56 NC_001875.2 + 11570 0.71 0.583556
Target:  5'- cGCCGaagcggggaGCGguGuGCGCCUACGUGAg -3'
miRNA:   3'- cCGGCa--------CGCguUuCGCGGAUGCACUg -5'
6863 3' -56 NC_001875.2 + 12432 0.71 0.635196
Target:  5'- aGGCCGuUGCGUgc-GCGCC-GCGgugGACg -3'
miRNA:   3'- -CCGGC-ACGCGuuuCGCGGaUGCa--CUG- -5'
6863 3' -56 NC_001875.2 + 12972 0.66 0.869744
Target:  5'- cGGgCGUGgGCuccGCGCCgugGUGGCu -3'
miRNA:   3'- -CCgGCACgCGuuuCGCGGaugCACUG- -5'
6863 3' -56 NC_001875.2 + 13538 0.69 0.711173
Target:  5'- aGCCGuUGUuGCAAGcGCGCCagcugcagccacucuUGCGUGGCg -3'
miRNA:   3'- cCGGC-ACG-CGUUU-CGCGG---------------AUGCACUG- -5'
6863 3' -56 NC_001875.2 + 14178 1.11 0.001691
Target:  5'- gGGCCGUGCGCAAAGCGCCUACGUGACu -3'
miRNA:   3'- -CCGGCACGCGUUUCGCGGAUGCACUG- -5'
6863 3' -56 NC_001875.2 + 14226 1.11 0.001691
Target:  5'- gGGCCGUGCGCAAAGCGCCUACGUGACu -3'
miRNA:   3'- -CCGGCACGCGUUUCGCGGAUGCACUG- -5'
6863 3' -56 NC_001875.2 + 16252 0.7 0.666213
Target:  5'- aGGCCGUcacGCGCGu-GCGUC-ACGUGGu -3'
miRNA:   3'- -CCGGCA---CGCGUuuCGCGGaUGCACUg -5'
6863 3' -56 NC_001875.2 + 16939 0.71 0.624841
Target:  5'- cGCaucgGCGCGuuGCGCC-ACGUGACc -3'
miRNA:   3'- cCGgca-CGCGUuuCGCGGaUGCACUG- -5'
6863 3' -56 NC_001875.2 + 17829 0.69 0.727234
Target:  5'- cGGCCGccaUGCGCGAgGGCGCCgaaaacgAgGUG-Ca -3'
miRNA:   3'- -CCGGC---ACGCGUU-UCGCGGa------UgCACuG- -5'
6863 3' -56 NC_001875.2 + 18129 0.69 0.727234
Target:  5'- cGGCUuUGUGCuGGGCGacaccaUCUACGUGACc -3'
miRNA:   3'- -CCGGcACGCGuUUCGC------GGAUGCACUG- -5'
6863 3' -56 NC_001875.2 + 18282 0.7 0.645549
Target:  5'- cGCCGUGCGCGAccGCGCCgu--UGAUu -3'
miRNA:   3'- cCGGCACGCGUUu-CGCGGaugcACUG- -5'
6863 3' -56 NC_001875.2 + 18432 0.69 0.727234
Target:  5'- -cUCG-GCGCGAGGCGCgguccGCGUGGCg -3'
miRNA:   3'- ccGGCaCGCGUUUCGCGga---UGCACUG- -5'
6863 3' -56 NC_001875.2 + 19106 0.75 0.401383
Target:  5'- gGGCCGUguugcugugcGCGCGAcGCGCCUACcacGGCg -3'
miRNA:   3'- -CCGGCA----------CGCGUUuCGCGGAUGca-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.