miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 3' -65.1 NC_001875.2 + 85359 0.66 0.443884
Target:  5'- aCGCCgugGCGGCGUuCGcGuuGGCaaaCGCCg -3'
miRNA:   3'- aGUGGa--CGUCGCGcGC-CggCCG---GCGG- -5'
6864 3' -65.1 NC_001875.2 + 48011 0.66 0.435293
Target:  5'- -aACCagaucGUGGUG-GCGGCCcacguGGCCGCCg -3'
miRNA:   3'- agUGGa----CGUCGCgCGCCGG-----CCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 90479 0.66 0.443884
Target:  5'- uUCG-CUGCAGCGCGCGuucaaacugcGCgCGGCC-Ca -3'
miRNA:   3'- -AGUgGACGUCGCGCGC----------CG-GCCGGcGg -5'
6864 3' -65.1 NC_001875.2 + 38539 0.66 0.443884
Target:  5'- --uUUUGCAGCuCGUGGCCGgGuuGCUg -3'
miRNA:   3'- aguGGACGUCGcGCGCCGGC-CggCGG- -5'
6864 3' -65.1 NC_001875.2 + 36863 0.66 0.438718
Target:  5'- gUACC-GCAaaagaacgucgucguGCGCGCGGCacaCCGCCg -3'
miRNA:   3'- aGUGGaCGU---------------CGCGCGCCGgccGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 121451 0.66 0.488203
Target:  5'- gCGCCa-CGGCGCgGCGGCguucaaaguuuuCGGCCagGCCg -3'
miRNA:   3'- aGUGGacGUCGCG-CGCCG------------GCCGG--CGG- -5'
6864 3' -65.1 NC_001875.2 + 40334 0.66 0.443884
Target:  5'- cCACCUGgAcguGCGCGCGuaUGGCUaCCu -3'
miRNA:   3'- aGUGGACgU---CGCGCGCcgGCCGGcGG- -5'
6864 3' -65.1 NC_001875.2 + 31699 0.66 0.45257
Target:  5'- cCGCC-GCuuGCGCGCcGCCGG-CGCa -3'
miRNA:   3'- aGUGGaCGu-CGCGCGcCGGCCgGCGg -5'
6864 3' -65.1 NC_001875.2 + 26335 0.66 0.435293
Target:  5'- gUCGCCaaGCAGUGUGUuuagGGCaaaGGUgGCCa -3'
miRNA:   3'- -AGUGGa-CGUCGCGCG----CCGg--CCGgCGG- -5'
6864 3' -65.1 NC_001875.2 + 107845 0.66 0.435293
Target:  5'- gCGCCuUGCGacGCGCGCGaGuuGGUCGaaaCg -3'
miRNA:   3'- aGUGG-ACGU--CGCGCGC-CggCCGGCg--G- -5'
6864 3' -65.1 NC_001875.2 + 37098 0.66 0.45257
Target:  5'- cCGCCgcgugGguGUGCG-GGCgCGGCgccgCGCCg -3'
miRNA:   3'- aGUGGa----CguCGCGCgCCG-GCCG----GCGG- -5'
6864 3' -65.1 NC_001875.2 + 30870 0.66 0.45257
Target:  5'- -gGCCUGCAGCGCGgGcGCUugcuuaagaGGCauaaacggGCCc -3'
miRNA:   3'- agUGGACGUCGCGCgC-CGG---------CCGg-------CGG- -5'
6864 3' -65.1 NC_001875.2 + 103817 0.66 0.443884
Target:  5'- gCGuuUGCGGCGCGUGcUgGGCCuucGCCa -3'
miRNA:   3'- aGUggACGUCGCGCGCcGgCCGG---CGG- -5'
6864 3' -65.1 NC_001875.2 + 79126 0.66 0.45257
Target:  5'- gUCGgCgGCgGGCGcCGCGGCgGGCUcguuuGCCa -3'
miRNA:   3'- -AGUgGaCG-UCGC-GCGCCGgCCGG-----CGG- -5'
6864 3' -65.1 NC_001875.2 + 63701 0.66 0.443884
Target:  5'- uUCGCCgaUGCGGUuugucggucgcgGCGaCGGCgGGCgcuuCGCCg -3'
miRNA:   3'- -AGUGG--ACGUCG------------CGC-GCCGgCCG----GCGG- -5'
6864 3' -65.1 NC_001875.2 + 29832 0.66 0.435293
Target:  5'- gCACgCUGCAGUccacCGCcGCCGcGCaCGCCg -3'
miRNA:   3'- aGUG-GACGUCGc---GCGcCGGC-CG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 74378 0.66 0.45257
Target:  5'- -gGCC-GCGGCGCGUucaGGCgCGGguaCUGCCu -3'
miRNA:   3'- agUGGaCGUCGCGCG---CCG-GCC---GGCGG- -5'
6864 3' -65.1 NC_001875.2 + 81288 0.66 0.435293
Target:  5'- -uGCCccGCAaaagacacGCGCGCcGCCGGCggCGCCu -3'
miRNA:   3'- agUGGa-CGU--------CGCGCGcCGGCCG--GCGG- -5'
6864 3' -65.1 NC_001875.2 + 110277 0.66 0.45257
Target:  5'- -gGCCgcGgAGCGCGCgGGCUGccccGUCGCCg -3'
miRNA:   3'- agUGGa-CgUCGCGCG-CCGGC----CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 67608 0.66 0.461348
Target:  5'- gCACCguuugGaacGUGCGCGGCUGaCUGCCc -3'
miRNA:   3'- aGUGGa----Cgu-CGCGCGCCGGCcGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.