miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 3' -65.1 NC_001875.2 + 1021 0.71 0.232933
Target:  5'- --uCUUGCAGCGCGUGGCgGGgC-CCg -3'
miRNA:   3'- aguGGACGUCGCGCGCCGgCCgGcGG- -5'
6864 3' -65.1 NC_001875.2 + 1711 0.7 0.255322
Target:  5'- cCACaaaugCUGCgGGCGCGacacCGGUCGcGCCGCCg -3'
miRNA:   3'- aGUG-----GACG-UCGCGC----GCCGGC-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 1777 0.66 0.470215
Target:  5'- cCACgaGCAuGC-CGCcGCCGccGCCGCCa -3'
miRNA:   3'- aGUGgaCGU-CGcGCGcCGGC--CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 1864 0.66 0.470215
Target:  5'- cCACgaGCAuGC-CGCcGCCGccGCCGCCg -3'
miRNA:   3'- aGUGgaCGU-CGcGCGcCGGC--CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 2301 0.7 0.249564
Target:  5'- gCGCCgugGCcGCGCGCaGCuCGGCCaGCUc -3'
miRNA:   3'- aGUGGa--CGuCGCGCGcCG-GCCGG-CGG- -5'
6864 3' -65.1 NC_001875.2 + 2658 0.69 0.298705
Target:  5'- cUACUUGCGGCGC-CGGC-GG-CGCCu -3'
miRNA:   3'- aGUGGACGUCGCGcGCCGgCCgGCGG- -5'
6864 3' -65.1 NC_001875.2 + 3040 0.73 0.17978
Target:  5'- aCGCCguuggGCAGCGCGUaagaGGCgcgcagCGGCgCGCCg -3'
miRNA:   3'- aGUGGa----CGUCGCGCG----CCG------GCCG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 3084 0.66 0.460466
Target:  5'- gUCGCCcacggcgUGCAcGCGcCGgGGCgCGGCuCGCg -3'
miRNA:   3'- -AGUGG-------ACGU-CGC-GCgCCG-GCCG-GCGg -5'
6864 3' -65.1 NC_001875.2 + 3818 0.69 0.325256
Target:  5'- cCACCgGCcgucgucGGCGCacgcCGGCgCGGCCGCa -3'
miRNA:   3'- aGUGGaCG-------UCGCGc---GCCG-GCCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 4534 0.68 0.333055
Target:  5'- cCGCCgGCuGCGguuccUGCGGUUugggGGCCGCCa -3'
miRNA:   3'- aGUGGaCGuCGC-----GCGCCGG----CCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 4990 0.67 0.418403
Target:  5'- gCGCCUcGCuGCuGUGCGGCacuugugcacuuUGcGCCGCCu -3'
miRNA:   3'- aGUGGA-CGuCG-CGCGCCG------------GC-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 5509 0.76 0.099661
Target:  5'- -gACCggcGCAcGCGCGCaguuuacGCCGGCCGCCg -3'
miRNA:   3'- agUGGa--CGU-CGCGCGc------CGGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 6378 0.68 0.36256
Target:  5'- gUCGUCggGCAcCGCGCGGcCCGGCaCGCg -3'
miRNA:   3'- -AGUGGa-CGUcGCGCGCC-GGCCG-GCGg -5'
6864 3' -65.1 NC_001875.2 + 6487 0.68 0.377978
Target:  5'- gCGCCcaacGCGGagugcCGCGCcaacacGCUGGCCGCCg -3'
miRNA:   3'- aGUGGa---CGUC-----GCGCGc-----CGGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 6973 0.69 0.318284
Target:  5'- gUACUUGCAGgGCgcaaaGCGGCCGGUgugggugUGCUg -3'
miRNA:   3'- aGUGGACGUCgCG-----CGCCGGCCG-------GCGG- -5'
6864 3' -65.1 NC_001875.2 + 7092 0.73 0.167275
Target:  5'- gCGCagacaUGCAGCGCGC-GCUGGCCGaCa -3'
miRNA:   3'- aGUGg----ACGUCGCGCGcCGGCCGGCgG- -5'
6864 3' -65.1 NC_001875.2 + 7253 0.69 0.298705
Target:  5'- cCGCgCUGCAGCG-GCcuGGCgCgGGUCGCCg -3'
miRNA:   3'- aGUG-GACGUCGCgCG--CCG-G-CCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 7360 0.67 0.385851
Target:  5'- -aGCCUGCGGUGCaGUGcccGCCGGauCgGCCa -3'
miRNA:   3'- agUGGACGUCGCG-CGC---CGGCC--GgCGG- -5'
6864 3' -65.1 NC_001875.2 + 8934 0.76 0.097188
Target:  5'- -gACgCUGCAGCa-GCGGCCGGCCGUUu -3'
miRNA:   3'- agUG-GACGUCGcgCGCCGGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 9020 0.66 0.488203
Target:  5'- cCACCU-CGGaCGCcuugcguuuggaGCcGCCGGCCGCg -3'
miRNA:   3'- aGUGGAcGUC-GCG------------CGcCGGCCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.