miRNA display CGI


Results 1 - 20 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 3' -65.1 NC_001875.2 + 129539 0.73 0.171354
Target:  5'- -gGCCgaGCuGCGCGCGGCCacGGCgCGCg -3'
miRNA:   3'- agUGGa-CGuCGCGCGCCGG--CCG-GCGg -5'
6864 3' -65.1 NC_001875.2 + 31975 0.74 0.144583
Target:  5'- aCGCgUGUGGCGCGCGuaCGGCCGg- -3'
miRNA:   3'- aGUGgACGUCGCGCGCcgGCCGGCgg -5'
6864 3' -65.1 NC_001875.2 + 110641 0.74 0.155555
Target:  5'- -aACCUGguG-GCGCuGGCCGuGCCGCg -3'
miRNA:   3'- agUGGACguCgCGCG-CCGGC-CGGCGg -5'
6864 3' -65.1 NC_001875.2 + 11050 0.73 0.158221
Target:  5'- uUCACCacgcgcgcaaacUGCAGCaguuugGCGUGGCgcgcgcccuggacaCGGCCGCCg -3'
miRNA:   3'- -AGUGG------------ACGUCG------CGCGCCG--------------GCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 68556 0.73 0.158221
Target:  5'- cCGCCgcgGCGGCggcggucgcgcaccGCGUGGCgccgcUGGCCGCCg -3'
miRNA:   3'- aGUGGa--CGUCG--------------CGCGCCG-----GCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 110742 0.73 0.163283
Target:  5'- gCGCgUGCAGUuuaaGCGCGGCgaccGCCGCCg -3'
miRNA:   3'- aGUGgACGUCG----CGCGCCGgc--CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 68712 0.73 0.163283
Target:  5'- gCGCCgGCcGCGCGC--CCGGCCGCUa -3'
miRNA:   3'- aGUGGaCGuCGCGCGccGGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 118303 0.73 0.167275
Target:  5'- aCGCC-GaCAGgGUcgagGCGGCCGGCCGCg -3'
miRNA:   3'- aGUGGaC-GUCgCG----CGCCGGCCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 7092 0.73 0.167275
Target:  5'- gCGCagacaUGCAGCGCGC-GCUGGCCGaCa -3'
miRNA:   3'- aGUGg----ACGUCGCGCGcCGGCCGGCgG- -5'
6864 3' -65.1 NC_001875.2 + 12276 0.75 0.127543
Target:  5'- gCACUUGCAggccaccGUGUGCaGCCGGCaCGCCg -3'
miRNA:   3'- aGUGGACGU-------CGCGCGcCGGCCG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 49830 0.75 0.124736
Target:  5'- cCACCUugccgauucGCuucuuuuuGCGCGcCGGCCGGCgCGCCu -3'
miRNA:   3'- aGUGGA---------CGu-------CGCGC-GCCGGCCG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 39933 0.75 0.121684
Target:  5'- -gGCCUGCGcgcaauuuGCGCGCGGuuGcccgacccGCCGCCg -3'
miRNA:   3'- agUGGACGU--------CGCGCGCCggC--------CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 50028 0.82 0.037661
Target:  5'- gUCGCCggGCGGCGagGCGGCCGGcCCGUCg -3'
miRNA:   3'- -AGUGGa-CGUCGCg-CGCCGGCC-GGCGG- -5'
6864 3' -65.1 NC_001875.2 + 100904 0.79 0.059953
Target:  5'- gCGCC-GCAGCGCGCGGagaCGcGUCGCCg -3'
miRNA:   3'- aGUGGaCGUCGCGCGCCg--GC-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 128656 0.78 0.080207
Target:  5'- -aACCUGUcucuGGUGCGCGGCCGccggcucaccuacucGCCGCCc -3'
miRNA:   3'- agUGGACG----UCGCGCGCCGGC---------------CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 88239 0.78 0.081437
Target:  5'- gCGCaaGCGGCGCGCGccGCCGcuGCCGCCg -3'
miRNA:   3'- aGUGgaCGUCGCGCGC--CGGC--CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 100296 0.77 0.094773
Target:  5'- -aACCUGCAGCGCGUGcaagugguGCCGuucaacgacccGCCGCCu -3'
miRNA:   3'- agUGGACGUCGCGCGC--------CGGC-----------CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 39668 0.77 0.094773
Target:  5'- -gGCCgGCGGCGCGCGGCggCGaGCUGCUa -3'
miRNA:   3'- agUGGaCGUCGCGCGCCG--GC-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 8934 0.76 0.097188
Target:  5'- -gACgCUGCAGCa-GCGGCCGGCCGUUu -3'
miRNA:   3'- agUG-GACGUCGcgCGCCGGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 81348 0.75 0.121684
Target:  5'- gCGCgCUGguGcCGCGCGcacgcGCCGGCCGCg -3'
miRNA:   3'- aGUG-GACguC-GCGCGC-----CGGCCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.