miRNA display CGI


Results 1 - 20 of 332 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6864 3' -65.1 NC_001875.2 + 13520 1.1 0.000294
Target:  5'- aUCACCUGCAGCGCGCGGCCGGCCGCCu -3'
miRNA:   3'- -AGUGGACGUCGCGCGCCGGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 37584 0.83 0.030584
Target:  5'- gCGCCggcGCgAGCGcCGCGGCCGGCCGCa -3'
miRNA:   3'- aGUGGa--CG-UCGC-GCGCCGGCCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 50028 0.82 0.037661
Target:  5'- gUCGCCggGCGGCGagGCGGCCGGcCCGUCg -3'
miRNA:   3'- -AGUGGa-CGUCGCg-CGCCGGCC-GGCGG- -5'
6864 3' -65.1 NC_001875.2 + 92516 0.81 0.04755
Target:  5'- gCGCCUGCAGCGCGC-GCaC-GCCGCCg -3'
miRNA:   3'- aGUGGACGUCGCGCGcCG-GcCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 81742 0.8 0.054095
Target:  5'- -gACCUGCAGUGgauucCGCGGCgGGCCGCg -3'
miRNA:   3'- agUGGACGUCGC-----GCGCCGgCCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 100904 0.79 0.059953
Target:  5'- gCGCC-GCAGCGCGCGGagaCGcGUCGCCg -3'
miRNA:   3'- aGUGGaCGUCGCGCGCCg--GC-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 22577 0.79 0.061511
Target:  5'- aCGCCcgggcGCGGCGCGuUGGCCGGCCGgCu -3'
miRNA:   3'- aGUGGa----CGUCGCGC-GCCGGCCGGCgG- -5'
6864 3' -65.1 NC_001875.2 + 49342 0.79 0.068143
Target:  5'- --uCCUGCAGCGUggGCGGCgGGCCGUg -3'
miRNA:   3'- aguGGACGUCGCG--CGCCGgCCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 98362 0.78 0.071165
Target:  5'- gCACCccagcgcGCGGCGCGCcacuuucgaccacuGGCCGGCCGCg -3'
miRNA:   3'- aGUGGa------CGUCGCGCG--------------CCGGCCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 81982 0.78 0.077405
Target:  5'- gCGCCgGCaaGGCGCGcCGGCCGGCgCGCa -3'
miRNA:   3'- aGUGGaCG--UCGCGC-GCCGGCCG-GCGg -5'
6864 3' -65.1 NC_001875.2 + 57467 0.78 0.079397
Target:  5'- gCGCCUGaacGCGcCGCGGCCGcGCaCGCCg -3'
miRNA:   3'- aGUGGACgu-CGC-GCGCCGGC-CG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 128656 0.78 0.080207
Target:  5'- -aACCUGUcucuGGUGCGCGGCCGccggcucaccuacucGCCGCCc -3'
miRNA:   3'- agUGGACG----UCGCGCGCCGGC---------------CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 88239 0.78 0.081437
Target:  5'- gCGCaaGCGGCGCGCGccGCCGcuGCCGCCg -3'
miRNA:   3'- aGUGgaCGUCGCGCGC--CGGC--CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 114746 0.78 0.081437
Target:  5'- cCGCCaGUGGCGCGCGGCUuGCcCGCCu -3'
miRNA:   3'- aGUGGaCGUCGCGCGCCGGcCG-GCGG- -5'
6864 3' -65.1 NC_001875.2 + 88819 0.77 0.086542
Target:  5'- gCGCCcGCGGCGCGCggcacucgcaauggaGGCCaccuucgcaacGGCCGCCg -3'
miRNA:   3'- aGUGGaCGUCGCGCG---------------CCGG-----------CCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 39668 0.77 0.094773
Target:  5'- -gGCCgGCGGCGCGCGGCggCGaGCUGCUa -3'
miRNA:   3'- agUGGaCGUCGCGCGCCG--GC-CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 100296 0.77 0.094773
Target:  5'- -aACCUGCAGCGCGUGcaagugguGCCGuucaacgacccGCCGCCu -3'
miRNA:   3'- agUGGACGUCGCGCGC--------CGGC-----------CGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 8934 0.76 0.097188
Target:  5'- -gACgCUGCAGCa-GCGGCCGGCCGUUu -3'
miRNA:   3'- agUG-GACGUCGcgCGCCGGCCGGCGG- -5'
6864 3' -65.1 NC_001875.2 + 94243 0.76 0.099661
Target:  5'- aCGCC-GC--CGUGCGGCCGGCCGCg -3'
miRNA:   3'- aGUGGaCGucGCGCGCCGGCCGGCGg -5'
6864 3' -65.1 NC_001875.2 + 5509 0.76 0.099661
Target:  5'- -gACCggcGCAcGCGCGCaguuuacGCCGGCCGCCg -3'
miRNA:   3'- agUGGa--CGU-CGCGCGc------CGGCCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.