miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6866 3' -55.4 NC_001875.2 + 109856 0.66 0.87826
Target:  5'- uUGCUGCGCGCguuuGCCAagcuGgcGcUGGCg -3'
miRNA:   3'- -ACGGCGCGCG----UGGUguuuCuaC-ACCG- -5'
6866 3' -55.4 NC_001875.2 + 94741 0.66 0.905479
Target:  5'- cGCCGCGCccGCAcacCCACGcGGcgGUGuCg -3'
miRNA:   3'- aCGGCGCG--CGU---GGUGUuUCuaCACcG- -5'
6866 3' -55.4 NC_001875.2 + 81356 0.66 0.870873
Target:  5'- gUGCCGCGCGCACgCGCc-------GGCc -3'
miRNA:   3'- -ACGGCGCGCGUG-GUGuuucuacaCCG- -5'
6866 3' -55.4 NC_001875.2 + 110084 0.66 0.891662
Target:  5'- cGCUGCGCGUggaggccGCCACGcgcggccagagcAAGAacgcgcUGUGGa -3'
miRNA:   3'- aCGGCGCGCG-------UGGUGU------------UUCU------ACACCg -5'
6866 3' -55.4 NC_001875.2 + 111838 0.66 0.885418
Target:  5'- gGCUGCGCGaGCCGgccAGGUGUcuGGCc -3'
miRNA:   3'- aCGGCGCGCgUGGUguuUCUACA--CCG- -5'
6866 3' -55.4 NC_001875.2 + 1833 0.66 0.870873
Target:  5'- aUGCCGcCGC-CGCCGCcaaugguAGAUuUGGCc -3'
miRNA:   3'- -ACGGC-GCGcGUGGUGuu-----UCUAcACCG- -5'
6866 3' -55.4 NC_001875.2 + 18719 0.66 0.87826
Target:  5'- gUGCCGCacaacaacaGCGCGCC-CAAAuAUGaaaaGGCg -3'
miRNA:   3'- -ACGGCG---------CGCGUGGuGUUUcUACa---CCG- -5'
6866 3' -55.4 NC_001875.2 + 40088 0.66 0.884713
Target:  5'- gGCCGCGgcgcugaCGCGCCACu-GGc--UGGCg -3'
miRNA:   3'- aCGGCGC-------GCGUGGUGuuUCuacACCG- -5'
6866 3' -55.4 NC_001875.2 + 111110 0.66 0.885418
Target:  5'- uUGCgGCGUGCACgGCAGcaAUGcgucacGGCg -3'
miRNA:   3'- -ACGgCGCGCGUGgUGUUucUACa-----CCG- -5'
6866 3' -55.4 NC_001875.2 + 74040 0.66 0.870873
Target:  5'- uUGCCGCGCuaaaaaccGCGCUGCucggcguGGAUuGUGcGCg -3'
miRNA:   3'- -ACGGCGCG--------CGUGGUGuu-----UCUA-CAC-CG- -5'
6866 3' -55.4 NC_001875.2 + 6289 0.66 0.891662
Target:  5'- aGcCCGUGCguccaauGCACCGCAAcaAGcAUGguggGGCa -3'
miRNA:   3'- aC-GGCGCG-------CGUGGUGUU--UC-UACa---CCG- -5'
6866 3' -55.4 NC_001875.2 + 12416 0.66 0.884713
Target:  5'- uUGCCGCGCGCcaagcagGCCguugcgugcGCGccGcgGUGGa -3'
miRNA:   3'- -ACGGCGCGCG-------UGG---------UGUuuCuaCACCg -5'
6866 3' -55.4 NC_001875.2 + 122716 0.66 0.885418
Target:  5'- cUGgCGCGCGaguCCACGgcguccGAGuucGUGGCg -3'
miRNA:   3'- -ACgGCGCGCgu-GGUGU------UUCua-CACCG- -5'
6866 3' -55.4 NC_001875.2 + 16534 0.66 0.87826
Target:  5'- gGUCGCGCGUGCaaUACAAuGAcGUGcGCg -3'
miRNA:   3'- aCGGCGCGCGUG--GUGUUuCUaCAC-CG- -5'
6866 3' -55.4 NC_001875.2 + 17742 0.66 0.892344
Target:  5'- gUGCUGUGCGuCGCCAUGccGcuUGUGGa -3'
miRNA:   3'- -ACGGCGCGC-GUGGUGUuuCu-ACACCg -5'
6866 3' -55.4 NC_001875.2 + 114032 0.66 0.87826
Target:  5'- gGCCGCGCGguCC----AGAUGguagcacgcgGGCu -3'
miRNA:   3'- aCGGCGCGCguGGuguuUCUACa---------CCG- -5'
6866 3' -55.4 NC_001875.2 + 85219 0.66 0.891662
Target:  5'- cGCCGCGCgguaGCGCCGCAugucgacGAGcgcgGGUu -3'
miRNA:   3'- aCGGCGCG----CGUGGUGU-------UUCuacaCCG- -5'
6866 3' -55.4 NC_001875.2 + 39048 0.66 0.87826
Target:  5'- gGCgGCGCuGUACCGCAAGcgcaUGGCc -3'
miRNA:   3'- aCGgCGCG-CGUGGUGUUUcuacACCG- -5'
6866 3' -55.4 NC_001875.2 + 17966 0.66 0.892344
Target:  5'- aGCCaGCGCGUccCCACucuGGAUucgGGCg -3'
miRNA:   3'- aCGG-CGCGCGu-GGUGuu-UCUAca-CCG- -5'
6866 3' -55.4 NC_001875.2 + 39672 0.66 0.876067
Target:  5'- gGCgGCGCGCGgCgGCGagcugcuagaguuuGAGcgGUGGUu -3'
miRNA:   3'- aCGgCGCGCGU-GgUGU--------------UUCuaCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.